Your message dated Thu, 7 May 2020 07:00:24 +0200
with message-id <20200507050024.gd29...@an3as.eu>
and subject line Re: Packaging libsis-jhdf5-java -- help needed
has caused the Debian Bug report #842815,
regarding libsis-jhdf5-java: FTBFS: java.lang.NoClassDefFoundError: Could not 
initialize class ch.systemsx.cisd.hdf5.CharacterEncoding
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
842815: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=842815
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: libsis-jhdf5-java
Version: 14.12.1-2
Severity: important

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Hi,

libsis-jhdf5-java FTBFS against hdf5-1.10 currently in experimental:

===============================================
All
Total tests run: 309, Failures: 279, Skips: 6
===============================================

[Utils] Attempting to create /<<PKGBUILDDIR>>/test-output/old/All/toc.html
[Utils]   Directory /<<PKGBUILDDIR>>/test-output/old/All exists: true
[Utils] Attempting to create /<<PKGBUILDDIR>>/test-output/old/All/All.properties
[Utils]   Directory /<<PKGBUILDDIR>>/test-output/old/All exists: true
[Utils] Attempting to create /<<PKGBUILDDIR>>/test-output/old/All/index.html
[Utils]   Directory /<<PKGBUILDDIR>>/test-output/old/All exists: true
[Utils] Attempting to create /<<PKGBUILDDIR>>/test-output/old/All/main.html
[Utils]   Directory /<<PKGBUILDDIR>>/test-output/old/All exists: true
[Utils] Attempting to create /<<PKGBUILDDIR>>/test-output/old/All/groups.html
[Utils]   Directory /<<PKGBUILDDIR>>/test-output/old/All exists: true
[Utils] Attempting to create /<<PKGBUILDDIR>>/test-output/old/All/classes.html
[Utils]   Directory /<<PKGBUILDDIR>>/test-output/old/All exists: true
[Utils] Attempting to create 
/<<PKGBUILDDIR>>/test-output/old/All/reporter-output.html
[Utils]   Directory /<<PKGBUILDDIR>>/test-output/old/All exists: true
[Utils] Attempting to create 
/<<PKGBUILDDIR>>/test-output/old/All/methods-not-run.html
[Utils]   Directory /<<PKGBUILDDIR>>/test-output/old/All exists: true
[Utils] Attempting to create 
/<<PKGBUILDDIR>>/test-output/old/All/testng.xml.html
[Utils]   Directory /<<PKGBUILDDIR>>/test-output/old/All exists: true
[Utils] Attempting to create test-output/old/index.html
[Utils]   Directory test-output/old exists: true
[TestNG] Time taken by org.testng.reporters.SuiteHTMLReporter@156643d4: 83 ms
[TestNG] Time taken by org.testng.reporters.EmailableReporter2@7d6f77cc: 37 ms
[Utils] Attempting to create 
test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.HDF5TimeDurationReaderTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create 
test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.HDF5UtilsTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create 
test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.h5ar.DirectoryIndexUpdaterTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create 
test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.UnsignedIntUtilsTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create 
test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFileTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create 
test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.HDF5RoundtripTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create 
test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.BitSetConversionTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create 
test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create 
test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.HDF5TimeUnitTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create 
test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.h5ar.UtilsTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create 
test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategyTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create 
test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.MatrixUtilsTest.xml
[Utils]   Directory test-output/junitreports exists: true
[TestNG] Time taken by org.testng.reporters.JUnitReportReporter@6f75e721: 44 ms
[Utils] Attempting to create test-output/testng-failed.xml
[Utils]   Directory test-output exists: true
[Utils] Attempting to create /<<PKGBUILDDIR>>/test-output/All/testng-failed.xml
[Utils]   Directory /<<PKGBUILDDIR>>/test-output/All exists: true
[TestNG] Time taken by [FailedReporter passed=0 failed=0 skipped=0]: 17 ms
[TestNG] Time taken by org.testng.reporters.XMLReporter@41a4555e: 65 ms
[TestNG] Time taken by org.testng.reporters.jq.Main@1175e2db: 62 ms
debian/rules:46: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Error 3
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules:16: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2

Full build log attached.

Thanks,

_g.

- -- System Information:
Debian Release: stretch/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.7.0-1-amd64 (SMP w/2 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

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Attachment: libsis-jhdf5-java_14.12.1-2_amd64.build.gz
Description: application/gzip


--- End Message ---
--- Begin Message ---
Hi Pierre,

On Fri, May 01, 2020 at 07:48:14AM +0200, Pierre Gruet wrote:
> 
> I was planning to consider a full refresh of debian/rules, including
> dh_auto_clean.

Since I realised your changelog that all tests are passing I decided to
upload the current status in Git.  That's really great work since it
might finaly enable building megan-ce[1] which is since a looooong time
on my todo list.  I'll recheck this once I'm back from pseudo-VAC this
week.

In case you might plan further polishing on libsis-jhdf5-java we can do
this in another revision.  I think its good for the moment and finally
closes #842815 (argh, forgot to close this in d/changelog which I'm
hereby doing manually).

Thanks again for your very helpful contribution and feel free to ping
me for other Java packaging issues in Debian Med team.  We have a lot
on our stack. ;-)

Kind regards

       Andreas.

[1] https://salsa.debian.org/med-team/megan-ce

-- 
http://fam-tille.de

--- End Message ---

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