Your message dated Tue, 21 Apr 2020 17:33:48 +0000 with message-id <e1jqwmk-000elp...@fasolo.debian.org> and subject line Bug#955081: fixed in deap 1.3.1-2 has caused the Debian Bug report #955081, regarding deap: FTBFS with Sphinx 2.4: ImportError: cannot import name 'algorithms' from 'deap' (../deap/__init__.py) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 955081: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=955081 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: deap Version: 1.3.1-1 Severity: important Tags: ftbfs User: python-modules-t...@lists.alioth.debian.org Usertags: sphinx2.4 Hi, deap fails to build with Sphinx 2.4, currently available in experimental. Relevant part (hopefully): > make[2]: Entering directory '/<<PKGBUILDDIR>>/doc' > PYTHONPATH=/<<PKGBUILDDIR>>/../ sphinx-build -b html -d _build/doctrees . > _build/html > Running Sphinx v2.4.3 > WARNING: Support for evaluating Python 2 syntax is deprecated and will be > removed in Sphinx 4.0. Convert /<<PKGBUILDDIR>>/doc/conf.py to Python 3 > syntax. > making output directory... done > WARNING: favicon file 'deap_orange_icon_32.ico' does not exist > loading intersphinx inventory from http://docs.python.org/objects.inv... > loading intersphinx inventory from > http://docs.scipy.org/doc/numpy/objects.inv... > WARNING: failed to reach any of the inventories with the following issues: > intersphinx inventory 'http://docs.scipy.org/doc/numpy/objects.inv' not > fetchable due to <class 'requests.exceptions.ProxyError'>: > HTTPConnectionPool(host='127.0.0.1', port=9): Max retries exceeded with url: > http://docs.scipy.org/doc/numpy/objects.inv (Caused by ProxyError('Cannot > connect to proxy.', NewConnectionError('<urllib3.connection.HTTPConnection > object at 0x7f2db902bc70>: Failed to establish a new connection: [Errno 111] > Connection refused'))) > WARNING: failed to reach any of the inventories with the following issues: > intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due > to <class 'requests.exceptions.ProxyError'>: > HTTPConnectionPool(host='127.0.0.1', port=9): Max retries exceeded with url: > http://docs.python.org/objects.inv (Caused by ProxyError('Cannot connect to > proxy.', NewConnectionError('<urllib3.connection.HTTPConnection object at > 0x7f2db87cb100>: Failed to establish a new connection: [Errno 111] Connection > refused'))) > building [mo]: targets for 0 po files that are out of date > building [html]: targets for 43 source files that are out of date > updating environment: [new config] 43 added, 0 changed, 0 removed > reading sources... [ 2%] about > reading sources... [ 4%] api/algo > reading sources... [ 6%] api/base > reading sources... [ 9%] api/benchmarks > reading sources... [ 11%] api/creator > reading sources... [ 13%] api/gp > reading sources... [ 16%] api/index > reading sources... [ 18%] api/tools > reading sources... [ 20%] contributing > reading sources... [ 23%] examples/bipop_cmaes > reading sources... [ 25%] examples/cmaes > reading sources... [ 27%] examples/cmaes_plotting > reading sources... [ 30%] examples/coev_coop > reading sources... [ 32%] examples/eda > reading sources... [ 34%] examples/es_fctmin > reading sources... [ 37%] examples/es_onefifth > reading sources... [ 39%] examples/ga_knapsack > reading sources... [ 41%] examples/ga_onemax > reading sources... [ 44%] examples/ga_onemax_numpy > reading sources... [ 46%] examples/ga_onemax_short > reading sources... [ 48%] examples/gp_ant > reading sources... [ 51%] examples/gp_multiplexer > reading sources... [ 53%] examples/gp_parity > reading sources... [ 55%] examples/gp_spambase > reading sources... [ 58%] examples/gp_symbreg > reading sources... [ 60%] examples/index > reading sources... [ 62%] examples/nsga3 > reading sources... [ 65%] examples/pso_basic > reading sources... [ 67%] examples/pso_multiswarm > reading sources... [ 69%] index > reading sources... [ 72%] installation > reading sources... [ 74%] overview > reading sources... [ 76%] porting > reading sources... [ 79%] releases > reading sources... [ 81%] tutorials/advanced/benchmarking > reading sources... [ 83%] tutorials/advanced/checkpoint > reading sources... [ 86%] tutorials/advanced/constraints > reading sources... [ 88%] tutorials/advanced/gp > reading sources... [ 90%] tutorials/advanced/numpy > reading sources... [ 93%] tutorials/basic/part1 > reading sources... [ 95%] tutorials/basic/part2 > reading sources... [ 97%] tutorials/basic/part3 > reading sources... [100%] tutorials/basic/part4 > > WARNING: autodoc: failed to import module 'algorithms' from module 'deap'; > the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'algorithms.eaSimple' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'algorithms.eaMuPlusLambda' from > module 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'algorithms.eaMuCommaLambda' from > module 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'algorithms.eaGenerateUpdate' > from module 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'algorithms.varAnd' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'algorithms.varOr' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import module 'cma' from module 'deap'; the > following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import class 'cma.Strategy' from module 'deap'; > the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import class 'cma.StrategyOnePlusLambda' from > module 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import class 'cma.StrategyMultiObjective' from > module 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import module 'gp' from module 'deap'; the > following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import class 'gp.PrimitiveTree' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import class 'gp.PrimitiveSet' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import class 'gp.Primitive' from module 'deap'; > the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import class 'gp.Terminal' from module 'deap'; > the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import class 'gp.Ephemeral' from module 'deap'; > the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.compile' from module 'deap'; > the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.compileADF' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import class 'gp.PrimitiveSetTyped' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.graph' from module 'deap'; > the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.genFull' from module 'deap'; > the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.genGrow' from module 'deap'; > the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.genHalfAndHalf' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.genRamped' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.cxOnePoint' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.cxOnePointLeafBiased' from > module 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.cxSemantic' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.mutShrink' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.mutUniform' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.mutNodeReplacement' from > module 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.mutEphemeral' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.mutInsert' from module > 'deap'; the following exception was raised: > No module named 'tools' > WARNING: autodoc: failed to import function 'gp.mutSemantic' from module > 'deap'; the following exception was raised: > No module named 'tools' > ../deap/tools/emo.py:docstring of deap.tools.sortNondominated:14: WARNING: > Duplicate explicit target name: "deb2002". > WARNING: autodoc: failed to import function 'gp.staticLimit' from module > 'deap'; the following exception was raised: > No module named 'tools' > ../deap/tools/emo.py:docstring of deap.tools.sortNondominated:14: WARNING: > duplicate citation Deb2002, other instance in > /<<PKGBUILDDIR>>/doc/api/tools.rst > /<<PKGBUILDDIR>>/doc/examples/cmaes.rst:30: WARNING: duplicate citation > Hansen2001, other instance in /<<PKGBUILDDIR>>/doc/examples/bipop_cmaes.rst > /<<PKGBUILDDIR>>/doc/examples/cmaes_plotting.rst:54: WARNING: Exception > occurred in plotting cma_plotting > from /<<PKGBUILDDIR>>/doc/../examples/es/cma_plotting.py: > Traceback (most recent call last): > File > "/usr/lib/python3/dist-packages/matplotlib/sphinxext/plot_directive.py", line > 484, in run_code > exec(code, ns) > File "<string>", line 18, in <module> > ImportError: cannot import name 'algorithms' from 'deap' (../deap/__init__.py) > /<<PKGBUILDDIR>>/doc/examples/eda.rst:20: WARNING: Include file > '/<<PKGBUILDDIR>>/examples/eda/fctmin.py' not found or reading it failed > /<<PKGBUILDDIR>>/doc/examples/eda.rst:40: WARNING: Include file > '/<<PKGBUILDDIR>>/examples/eda/fctmin.py' not found or reading it failed > /<<PKGBUILDDIR>>/doc/examples/eda.rst:52: WARNING: Include file > '/<<PKGBUILDDIR>>/examples/eda/fctmin.py' not found or reading it failed > /<<PKGBUILDDIR>>/doc/examples/es_fctmin.rst:60: WARNING: duplicate citation > Beyer2002, other instance in /<<PKGBUILDDIR>>/doc/api/tools.rst > /<<PKGBUILDDIR>>/doc/examples/gp_symbreg.rst.rst:105: WARNING: line number > spec is out of range(1-7): '9' > /<<PKGBUILDDIR>>/doc/examples/nsga3.rst:109: WARNING: duplicate citation > Deb2014, other instance in /<<PKGBUILDDIR>>/doc/api/tools.rst > /<<PKGBUILDDIR>>/doc/examples/pso_multiswarm.rst:14: WARNING: Include file > '/<<PKGBUILDDIR>>/doc/examples/pso/multiswarm.py' not found or reading it > failed > /<<PKGBUILDDIR>>/doc/releases.rst:89: WARNING: Unknown target name: "type". > looking for now-outdated files... none found > pickling environment... done > checking consistency... done > preparing documents... done > writing output... [ 2%] about > writing output... [ 4%] api/algo > writing output... [ 6%] api/base > writing output... [ 9%] api/benchmarks > writing output... [ 11%] api/creator > writing output... [ 13%] api/gp > writing output... [ 16%] api/index > writing output... [ 18%] api/tools > writing output... [ 20%] contributing > writing output... [ 23%] examples/bipop_cmaes > writing output... [ 25%] examples/cmaes > writing output... [ 27%] examples/cmaes_plotting > writing output... [ 30%] examples/coev_coop > writing output... [ 32%] examples/eda > writing output... [ 34%] examples/es_fctmin > writing output... [ 37%] examples/es_onefifth > writing output... [ 39%] examples/ga_knapsack > writing output... [ 41%] examples/ga_onemax > writing output... [ 44%] examples/ga_onemax_numpy > writing output... [ 46%] examples/ga_onemax_short > writing output... [ 48%] examples/gp_ant > writing output... [ 51%] examples/gp_multiplexer > writing output... [ 53%] examples/gp_parity > writing output... [ 55%] examples/gp_spambase > writing output... [ 58%] examples/gp_symbreg > writing output... [ 60%] examples/index > writing output... [ 62%] examples/nsga3 > writing output... [ 65%] examples/pso_basic > writing output... [ 67%] examples/pso_multiswarm > writing output... [ 69%] index > ../deap/creator.py:docstring of deap.creator.create:35: WARNING: unknown > document: tutorials/advanced/numpy > ../deap/tools/crossover.py:docstring of deap.tools.cxOnePoint:1: WARNING: > term not in glossary: sequence > ../deap/tools/crossover.py:docstring of deap.tools.cxTwoPoint:1: WARNING: > term not in glossary: sequence > ../deap/tools/crossover.py:docstring of deap.tools.cxUniform:1: WARNING: term > not in glossary: sequence > ../deap/tools/crossover.py:docstring of deap.tools.cxPartialyMatched:1: > WARNING: term not in glossary: sequence > ../deap/tools/crossover.py:docstring of > deap.tools.cxUniformPartialyMatched:1: WARNING: term not in glossary: sequence > ../deap/tools/crossover.py:docstring of deap.tools.cxOrdered:1: WARNING: term > not in glossary: sequence > ../deap/tools/crossover.py:docstring of deap.tools.cxBlend:1: WARNING: term > not in glossary: sequence > ../deap/tools/crossover.py:docstring of deap.tools.cxESBlend:1: WARNING: term > not in glossary: sequence > ../deap/tools/crossover.py:docstring of deap.tools.cxESBlend:1: WARNING: term > not in glossary: sequence > ../deap/tools/crossover.py:docstring of deap.tools.cxESTwoPoint:1: WARNING: > term not in glossary: sequence > ../deap/tools/crossover.py:docstring of deap.tools.cxESTwoPoint:1: WARNING: > term not in glossary: sequence > ../deap/tools/crossover.py:docstring of deap.tools.cxSimulatedBinary:1: > WARNING: term not in glossary: sequence > ../deap/tools/crossover.py:docstring of > deap.tools.cxSimulatedBinaryBounded:1: WARNING: term not in glossary: sequence > ../deap/tools/crossover.py:docstring of > deap.tools.cxSimulatedBinaryBounded:10: WARNING: term not in glossary: > python:sequence > ../deap/tools/crossover.py:docstring of > deap.tools.cxSimulatedBinaryBounded:12: WARNING: term not in glossary: > python:sequence > ../deap/tools/crossover.py:docstring of deap.tools.cxMessyOnePoint:1: > WARNING: term not in glossary: sequence > ../deap/tools/mutation.py:docstring of deap.tools.mutGaussian:1: WARNING: > term not in glossary: sequence > ../deap/tools/mutation.py:docstring of deap.tools.mutGaussian:7: WARNING: > term not in glossary: python:sequence > ../deap/tools/mutation.py:docstring of deap.tools.mutGaussian:9: WARNING: > term not in glossary: python:sequence > ../deap/tools/mutation.py:docstring of deap.tools.mutShuffleIndexes:1: > WARNING: term not in glossary: sequence > ../deap/tools/mutation.py:docstring of deap.tools.mutFlipBit:1: WARNING: term > not in glossary: sequence > ../deap/tools/mutation.py:docstring of deap.tools.mutUniformInt:4: WARNING: > term not in glossary: sequence > ../deap/tools/mutation.py:docstring of deap.tools.mutUniformInt:5: WARNING: > term not in glossary: python:sequence > ../deap/tools/mutation.py:docstring of deap.tools.mutUniformInt:8: WARNING: > term not in glossary: python:sequence > ../deap/tools/mutation.py:docstring of deap.tools.mutPolynomialBounded:4: > WARNING: term not in glossary: sequence > ../deap/tools/mutation.py:docstring of deap.tools.mutPolynomialBounded:8: > WARNING: term not in glossary: python:sequence > ../deap/tools/mutation.py:docstring of deap.tools.mutPolynomialBounded:10: > WARNING: term not in glossary: python:sequence > ../deap/tools/mutation.py:docstring of deap.tools.mutESLogNormal:13: WARNING: > term not in glossary: sequence > /<<PKGBUILDDIR>>/doc/examples/ga_onemax_short.rst:7: WARNING: undefined > label: -ga-onemax (if the link has no caption the label must precede a > section header) > > Theme error: > An error happened in rendering the page index. > Reason: TemplateNotFound() > make[2]: *** [Makefile:34: html] Error 2 The full build log is available from: http://qa-logs.debian.net/2020/03/26/deap_1.3.1-1_unstable_sphinx243.log Please see [1] for Sphinx changelog, which may give a hint of what changes in Sphinx caused this error. Also see [2] for the list of deprecated/removed APIs and possible alternatives to them. Sphinx 2.4 is going to be uploaded to unstable in a couple of weeks. When that happens, the severity of this bug will be bumped to serious. In case you have questions, please Cc sph...@packages.debian.org on reply. [1]: https://www.sphinx-doc.org/en/2.0/changes.html [2]: https://www.sphinx-doc.org/en/2.0/extdev/deprecated.html#dev-deprecated-apis A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Source: deap Source-Version: 1.3.1-2 Done: Christian Kastner <c...@debian.org> We believe that the bug you reported is fixed in the latest version of deap, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 955...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Christian Kastner <c...@debian.org> (supplier of updated deap package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 21 Apr 2020 19:08:31 +0200 Source: deap Architecture: source Version: 1.3.1-2 Distribution: unstable Urgency: medium Maintainer: Miriam Ruiz <mir...@debian.org> Changed-By: Christian Kastner <c...@debian.org> Closes: 955081 Changes: deap (1.3.1-2) unstable; urgency=medium . * Team upload. . * Add Adapt-conf.py-for-sphinx-2.0.patch. Resolves a FTBFS with the new sphinx. (Closes: #955081) * d/rules: Remove built docs during clean * autopkgtest: pyversions -s instead of -i. Checksums-Sha1: 034e2e6e5b27039e1da353f0a67d74eae8c30455 2202 deap_1.3.1-2.dsc 22f43b3f0e7eea18feb424ab323c60b380e45979 12036 deap_1.3.1-2.debian.tar.xz a04d1e00994d18cd1db18b4440b54926f636a074 10167 deap_1.3.1-2_source.buildinfo Checksums-Sha256: 8bdd176b02d1b3f9420fd9e573ff3b1a169acadcefe724fd5f20538faa258421 2202 deap_1.3.1-2.dsc bc13efa05ee10128b1754d4c26dbf51ad5cc90ad7890a069262bcb69f6859cf5 12036 deap_1.3.1-2.debian.tar.xz 1011c3d23ded733bc348043717481ffd4d8c695f6ff0432bd31711112083f40b 10167 deap_1.3.1-2_source.buildinfo Files: 3a1fd801b73911609f37853df46eda8a 2202 python optional deap_1.3.1-2.dsc 950acde3687382774709bf93012a416b 12036 python optional deap_1.3.1-2.debian.tar.xz 6805e4eae67ed348d66abd6e2a8788c2 10167 python optional deap_1.3.1-2_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEQZ9+mkfDq5UZ8bCjOZU6N95Os2sFAl6fKPwACgkQOZU6N95O s2taTw//TBG6Dg2qWQXwzQLBxzLHyHrKbL8vyS2s8G6PvulGhsPFr0cEUyL5N0yL R90Ixoy2d/0ak/5z+RueMmjvBKlMC3BV/XrarMFYCnUHc3n7IfxwUeemY6mIH2HU 54pyx3o53w95RiU4CDB40pq1iQcZ3o6pRIMdTvHLBUNIebbU5roRr8FjEOCQC6nt 3u4Up+cmjoHo/NntRB2M5/+tqOZwKfn/4v8i7wMan4hqa8Imz7XlUg2GpjVNHN7B C/L/ERn77SiUEziPiho7QFyVLzt58jWTVo1x5FTvVQTn5PqRnY5/r/dp90Ht8PYP 9rBEhCPfa0HDH3v/evUW1jsu8LxzTiWWuqXtXTb0CYmuNKtVWeBvKM0ELnyLTtoK PU9HRJGiA1CYiuC2o6z4/sym8wFauqObGiZ7yKomnY/OBD+eAGK5nSU+nwGg+wAP w0Z4Zwr1fwx/1ENJiDPmQQXfy2tPzPoYdv+V/i3Feif/FOl1bakL40xORudU2NZY t5/hm9zin+e60Ix5iS3KqvxIwl+1XRttrEtYXk0KHqXUq2vg92u1V9wietpOoDiw aqob9ALt9+01q4+HUDFWaoJA7wDn+cPnVarDwR/XMsPFhFkPt5BMDj6ZM1txw0U9 +NEhB4y8YGm4r4As8DHO2BMV5SqXjLDEhioxU7O5UZ+Wkplcn2U= =gZw1 -----END PGP SIGNATURE-----
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