Your message dated Tue, 07 Apr 2020 16:03:46 +0000 with message-id <e1jlqhw-000bfg...@fasolo.debian.org> and subject line Bug#955566: fixed in khmer 2.1.2+dfsg-7 has caused the Debian Bug report #955566, regarding khmer: autopkgtest regression: undefined references to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 955566: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=955566 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: khmer Version: 2.1.2+dfsg-6 X-Debbugs-CC: debian...@lists.debian.org Severity: serious User: debian...@lists.debian.org Usertags: regression Dear maintainer(s), Since 2019-11 the autopkgtest of khmer is failing. I copied some of the output at the bottom of this report. More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul https://ci.debian.net/data/autopkgtest/unstable/amd64/k/khmer/4760829/log.gz + pkg=khmer + [ /tmp/autopkgtest-lxc.zxrjb5bi/downtmp/autopkgtest_tmp = ] + cd /tmp/autopkgtest-lxc.zxrjb5bi/downtmp/autopkgtest_tmp + pkg-config oxli --static --cflags + pkg-config oxli --static --libs + c++ -o test-prog-static -static -std=c++11 -I/usr/local/include -I/usr/include/oxli/smhasher /usr/share/doc/khmer-common/test-compile.cc -L/usr/local/lib -loxli -lbz2 -lz + ./test-prog-static + pkg-config oxli --cflags + pkg-config oxli --libs + c++ -o test-prog-dynamic -std=c++11 -I/usr/local/include -I/usr/include/oxli/smhasher /usr/share/doc/khmer-common/test-compile.cc -L/usr/local/lib -loxli /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `gzerror' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `deflateInit2_' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `gzeof' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `deflate' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `deflateEnd' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `crc32' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `inflate' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `inflateInit2_' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `gzclearerr' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `inflateEnd' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `gzopen64' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `gzwrite' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `gzopen' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `BZ2_bzWriteClose' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `BZ2_bzReadOpen' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `BZ2_bzRead' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `gzdirect' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `gzclose' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `gzdopen' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `gzread' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `BZ2_bzWriteOpen' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `BZ2_bzReadClose' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so: undefined reference to `gztell64' collect2: error: ld returned 1 exit status
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--- Begin Message ---Source: khmer Source-Version: 2.1.2+dfsg-7 Done: michael.cru...@gmail.com (Michael R. Crusoe) We believe that the bug you reported is fixed in the latest version of khmer, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 955...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Michael R. Crusoe <michael.cru...@gmail.com> (supplier of updated khmer package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 07 Apr 2020 17:27:50 +0200 Source: khmer Architecture: source Version: 2.1.2+dfsg-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Michael R. Crusoe <michael.cru...@gmail.com> Closes: 955566 Changes: khmer (2.1.2+dfsg-7) unstable; urgency=medium . * Simplify autopkgtest. Closes: #955566 * s/ADTTMP/AUTOPKGTEST_TMP/g * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Use secure URI in Homepage field. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). Checksums-Sha1: 5fdade05b7a2df960aa50a8c373511cecb7cab5f 2686 khmer_2.1.2+dfsg-7.dsc a38bdcfcda13acc37398868d204b92da6b320dbf 14056 khmer_2.1.2+dfsg-7.debian.tar.xz 605c8cc62531bd16a0558ffa0ae5ae498f4ca81e 8281 khmer_2.1.2+dfsg-7_source.buildinfo Checksums-Sha256: f223b71f66d1ab13c13cbc48efba119309d991ed8ae4687923c3753820bca84f 2686 khmer_2.1.2+dfsg-7.dsc 9c2c59f0dfa647ea1f35ea3eefafcdc2d247f81ee7d2a4652c15b1de9cd09251 14056 khmer_2.1.2+dfsg-7.debian.tar.xz a5412761902e7a73096b41db2f8e5d1ab5dbf9392a4c66c59a360c1cc6c6c979 8281 khmer_2.1.2+dfsg-7_source.buildinfo Files: 3026b2d16064da06ef2a447be4518990 2686 science optional khmer_2.1.2+dfsg-7.dsc 9c36f0820cc4ad334e92788bbf7cc57c 14056 science optional khmer_2.1.2+dfsg-7.debian.tar.xz 9532e4cc3b2872fcb4017d532c5d36bc 8281 science optional khmer_2.1.2+dfsg-7_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl6MnfEACgkQPCZ2P2xn 5uI0wg//bcTxSL/yR8iMpv+NYiT5URXzPngizYtmPOgJfQIp3eQ4+o89icVzUpzh YtMJg5YR4FwcHPqrxtBJ34Fcqlf3Fx0VsXNLQu813HxuYNoLr9CqS6lDLQX/tc2N 4mOl1dJbTaZ0wHeg3uN7MVMHdaVT/FIjJRaEBqhGXijVRd/GqH3U4Bp36gJk25uj S2Hsec82PmPFCeQHgVjIuxYRU55j5NsXZTlOuTUG6VIqg3oW285xDcrLfOBxHUBN WQk5rvC8hY0oJLio951oVyAbT2ZYyGVndWv4XM3Cq1jmDm3NY7UPtYP8mB5rfiIY 1gfmhODKCzn/PPB6j6HL5/1vs1wyV06mZvHq5A5nb9Tq5A6yfc+fpRs9zkvJ/bL1 ZYvV4VoBwbm1yI87CoIq3d/tagE+3+6TUIEtb2iQcWXrTA2UHzxtzO915Jo/5mM0 ghUF0KppHCk/TslDqO7zHxNBomLwNAGEQzWSLNtuJ5L0rYjDpRvca6kyeBckYZt7 lcVCqyvTkz73gwXbQyoK1o5PYuwLMfBe3lA9EyYzD8mZDUXxUpRhpLL3dUBcM2he 10oP4W2ksuFRhDgUZkrqYiTULfO3jX+/ZoD4SwtyJbMXpkrpNJL29zquX42cFkan RUJfLcIOL35LyjT94drckLcDCwjTr3Rk5XMfFltivMc3f/2yFBY= =T4P6 -----END PGP SIGNATURE-----
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