Your message dated Tue, 07 Apr 2020 08:23:21 +0000
with message-id <e1jljvx-000bra...@fasolo.debian.org>
and subject line Bug#955669: fixed in rdkit 201909.1-3
has caused the Debian Bug report #955669,
regarding rdkit: FTBFS: make[2]: opt-9: Command not found
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
955669: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=955669
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: rdkit
Version: 201909.1-2
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200402 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[2]: Entering directory '/<<PKGBUILDDIR>>/build-12'
> gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement
> -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security
> -fno-strict-aliasing -fwrapv -fexcess-precision=standard
> -Wno-format-truncation -Wno-stringop-truncation -g -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security
> -fno-omit-frame-pointer -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<<PKGBUILDDIR>>/Code
> -DRDKITVER='"007300"' -I. -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit
> -I/usr/include/postgresql/12/server -I/usr/include/postgresql/internal
> -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2
> -I/usr/include/mit-krb5 -fPIC -c -o rdkit_io.o
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_io.c
> gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement
> -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security
> -fno-strict-aliasing -fwrapv -fexcess-precision=standard
> -Wno-format-truncation -Wno-stringop-truncation -g -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security
> -fno-omit-frame-pointer -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<<PKGBUILDDIR>>/Code
> -DRDKITVER='"007300"' -I. -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit
> -I/usr/include/postgresql/12/server -I/usr/include/postgresql/internal
> -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2
> -I/usr/include/mit-krb5 -fPIC -c -o mol_op.o
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c: In function ‘mol_murckoscaffold’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:263:3: warning: ISO C90 forbids
> mixed declarations and code [-Wdeclaration-after-statement]
> 263 | CROMol scaffold = MolMurckoScaffold(mol);
> | ^~~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c: In function ‘mol_hash’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:283:3: warning: ISO C90 forbids
> mixed declarations and code [-Wdeclaration-after-statement]
> 283 | char *res = pnstrdup(str, len);
> | ^~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c: In function ‘mol_nm_hash’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:298:3: warning: ISO C90 forbids
> mixed declarations and code [-Wdeclaration-after-statement]
> 298 | char *str = computeNMMolHash(mol, opts);
> | ^~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:300:3: warning: ISO C90 forbids
> mixed declarations and code [-Wdeclaration-after-statement]
> 300 | char *res = pnstrdup(str, strlen(str));
> | ^~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:293:7: warning: unused variable
> ‘len’ [-Wunused-variable]
> 293 | int len;
> | ^~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c: In function
> ‘mol_adjust_query_properties’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:313:3: warning: ISO C90 forbids
> mixed declarations and code [-Wdeclaration-after-statement]
> 313 | char *data = PG_GETARG_CSTRING(1);
> | ^~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:317:3: warning: ISO C90 forbids
> mixed declarations and code [-Wdeclaration-after-statement]
> 317 | Mol *res = deconstructROMol(adj);
> | ^~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c: In function ‘mol_to_svg’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:332:3: warning: ISO C90 forbids
> mixed declarations and code [-Wdeclaration-after-statement]
> 332 | char *legend = PG_GETARG_CSTRING(1);
> | ^~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c: In function ‘fmcs_smiles’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:356:3: warning: ISO C90 forbids
> mixed declarations and code [-Wdeclaration-after-statement]
> 356 | char *res = pnstrdup(str, strlen(str));
> | ^~~~
> In file included from /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:34:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c: In function
> ‘fmcs_mol2s_transition’:
> /usr/include/postgresql/12/server/fmgr.h:263:29: warning: initialization of
> ‘CROMol’ {aka ‘void *’} from ‘Datum’ {aka ‘long unsigned int’} makes pointer
> from integer without a cast [-Wint-conversion]
> 263 | #define PG_GETARG_DATUM(n) (fcinfo->args[n].value)
> | ^
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:408:18: note: in expansion of
> macro ‘PG_GETARG_DATUM’
> 408 | CROMol mol = PG_GETARG_DATUM(1);
> | ^~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:424:5: warning: ISO C90 forbids
> mixed declarations and code [-Wdeclaration-after-statement]
> 424 | text *ts = (text *)palloc(ts_size); // new return value
> | ^~~~
> In file included from /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:34:
> /usr/include/postgresql/12/server/fmgr.h:263:29: warning: initialization of
> ‘CROMol’ {aka ‘void *’} from ‘Datum’ {aka ‘long unsigned int’} makes pointer
> from integer without a cast [-Wint-conversion]
> 263 | #define PG_GETARG_DATUM(n) (fcinfo->args[n].value)
> | ^
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:436:18: note: in expansion of
> macro ‘PG_GETARG_DATUM’
> 436 | CROMol mol = PG_GETARG_DATUM(1);
> | ^~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:444:5: warning: ISO C90 forbids
> mixed declarations and code [-Wdeclaration-after-statement]
> 444 | char *smiles = makeMolText(mol, &len, false, false);
> | ^~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c: In function ‘fmcs_mols’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:482:3: warning: ISO C90 forbids
> mixed declarations and code [-Wdeclaration-after-statement]
> 482 | int32 ts_size = VARHDRSZ + strlen(str);
> | ^~~~~
> In file included from /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:34:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c: In function ‘fmcs_mol_transition’:
> /usr/include/postgresql/12/server/fmgr.h:263:29: warning: initialization of
> ‘CROMol’ {aka ‘void *’} from ‘Datum’ {aka ‘long unsigned int’} makes pointer
> from integer without a cast [-Wint-conversion]
> 263 | #define PG_GETARG_DATUM(n) (fcinfo->args[n].value)
> | ^
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:504:18: note: in expansion of
> macro ‘PG_GETARG_DATUM’
> 504 | CROMol mol = PG_GETARG_DATUM(1);
> | ^~~~~~~~~~~~~~~
> In file included from /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:33:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:511:21: warning: cast from pointer
> to integer of different size [-Wpointer-to-int-cast]
> 511 | PG_RETURN_INT32((int32)lst);
> | ^
> /usr/include/postgresql/12/server/postgres.h:479:36: note: in definition of
> macro ‘Int32GetDatum’
> 479 | #define Int32GetDatum(X) ((Datum) (X))
> | ^
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:511:5: note: in expansion of macro
> ‘PG_RETURN_INT32’
> 511 | PG_RETURN_INT32((int32)lst);
> | ^~~~~~~~~~~~~~~
> In file included from /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:34:
> /usr/include/postgresql/12/server/fmgr.h:263:29: warning: initialization of
> ‘CROMol’ {aka ‘void *’} from ‘Datum’ {aka ‘long unsigned int’} makes pointer
> from integer without a cast [-Wint-conversion]
> 263 | #define PG_GETARG_DATUM(n) (fcinfo->args[n].value)
> | ^
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:515:18: note: in expansion of
> macro ‘PG_GETARG_DATUM’
> 515 | CROMol mol = PG_GETARG_DATUM(1);
> | ^~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c: In function
> ‘fmcs_smiles_transition’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:388:1: warning: control reaches
> end of non-void function [-Wreturn-type]
> 388 | }
> | ^
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c: In function ‘fmcs_mol_transition’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:523:1: warning: control reaches
> end of non-void function [-Wreturn-type]
> 523 | }
> | ^
> gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement
> -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security
> -fno-strict-aliasing -fwrapv -fexcess-precision=standard
> -Wno-format-truncation -Wno-stringop-truncation -g -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security
> -fno-omit-frame-pointer -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<<PKGBUILDDIR>>/Code
> -DRDKITVER='"007300"' -I. -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit
> -I/usr/include/postgresql/12/server -I/usr/include/postgresql/internal
> -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2
> -I/usr/include/mit-krb5 -fPIC -c -o bfp_op.o
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/bfp_op.c
> gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement
> -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security
> -fno-strict-aliasing -fwrapv -fexcess-precision=standard
> -Wno-format-truncation -Wno-stringop-truncation -g -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security
> -fno-omit-frame-pointer -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<<PKGBUILDDIR>>/Code
> -DRDKITVER='"007300"' -I. -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit
> -I/usr/include/postgresql/12/server -I/usr/include/postgresql/internal
> -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2
> -I/usr/include/mit-krb5 -fPIC -c -o sfp_op.o
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/sfp_op.c
> gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement
> -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security
> -fno-strict-aliasing -fwrapv -fexcess-precision=standard
> -Wno-format-truncation -Wno-stringop-truncation -g -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security
> -fno-omit-frame-pointer -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<<PKGBUILDDIR>>/Code
> -DRDKITVER='"007300"' -I. -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit
> -I/usr/include/postgresql/12/server -I/usr/include/postgresql/internal
> -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2
> -I/usr/include/mit-krb5 -fPIC -c -o rxn_op.o
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rxn_op.c
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rxn_op.c:164:1: warning: multi-line comment
> [-Wcomment]
> 164 | // /* keep compiler quiet - no extra ; */
> \
> | ^
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rxn_op.c: In function ‘reaction_to_svg’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rxn_op.c:179:3: warning: ISO C90 forbids
> mixed declarations and code [-Wdeclaration-after-statement]
> 179 | bool highlightByReactants = PG_GETARG_BOOL(1);
> | ^~~~
> gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement
> -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security
> -fno-strict-aliasing -fwrapv -fexcess-precision=standard
> -Wno-format-truncation -Wno-stringop-truncation -g -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security
> -fno-omit-frame-pointer -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<<PKGBUILDDIR>>/Code
> -DRDKITVER='"007300"' -I. -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit
> -I/usr/include/postgresql/12/server -I/usr/include/postgresql/internal
> -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2
> -I/usr/include/mit-krb5 -fPIC -c -o rdkit_gist.o
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c: In function ‘soergeldistsign’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:240:3: warning: ISO C90
> forbids mixed declarations and code [-Wdeclaration-after-statement]
> 240 | uint8 *as = (uint8 *)VARDATA(a);
> | ^~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c: In function ‘soergeldist’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: implicit
> declaration of function ‘floor’ [-Wimplicit-function-declaration]
> 275 | return (int) floor(10000*soergeldistsign(a, b));
> | ^~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: incompatible
> implicit declaration of built-in function ‘floor’
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:42:1: note: include ‘<math.h>’
> or provide a declaration of ‘floor’
> 41 | #include "bitstring.h"
> +++ |+#include <math.h>
> 42 |
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:262:10: warning: unused
> variable ‘d’ [-Wunused-variable]
> 262 | double d;
> | ^
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c: In function ‘gmol_consistent’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:526:7: warning: ISO C90
> forbids mixed declarations and code [-Wdeclaration-after-statement]
> 526 | uint8 *k = (uint8 *)VARDATA(key);
> | ^~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:538:7: warning: ISO C90
> forbids mixed declarations and code [-Wdeclaration-after-statement]
> 538 | uint8 *k = (uint8 *)VARDATA(key);
> | ^~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:570:7: warning: ISO C90
> forbids mixed declarations and code [-Wdeclaration-after-statement]
> 570 | uint8 *k = (uint8 *)VARDATA(key);
> | ^~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c: In function
> ‘rdkit_consistent’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:658:3: warning: ISO C90
> forbids mixed declarations and code [-Wdeclaration-after-statement]
> 658 | int siglen = SIGLEN(query);
> | ^~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:673:5: warning: ISO C90
> forbids mixed declarations and code [-Wdeclaration-after-statement]
> 673 | uint8 *k = (uint8 *)VARDATA(key);
> | ^~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c: In function ‘gsfp_consistent’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:708:3: warning: ISO C90
> forbids mixed declarations and code [-Wdeclaration-after-statement]
> 708 | int sum, overlapSum, overlapN;
> | ^~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:714:3: warning: ISO C90
> forbids mixed declarations and code [-Wdeclaration-after-statement]
> 714 | int nKey = (ISALLTRUE(key)) ?
> | ^~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c: In function
> ‘greaction_consistent’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:787:7: warning: ISO C90
> forbids mixed declarations and code [-Wdeclaration-after-statement]
> 787 | uint8 *k = (uint8 *)VARDATA(key);
> | ^~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:804:7: warning: ISO C90
> forbids mixed declarations and code [-Wdeclaration-after-statement]
> 804 | uint8 *k = (uint8 *)VARDATA(key);
> | ^~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:832:7: warning: ISO C90
> forbids mixed declarations and code [-Wdeclaration-after-statement]
> 832 | uint8 *k = (uint8 *)VARDATA(key);
> | ^~~~~
> At top level:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:646:1: warning:
> ‘rdkit_consistent’ defined but not used [-Wunused-function]
> 646 | rdkit_consistent(GISTENTRY *entry, StrategyNumber strategy, bytea
> *key, bytea *query)
> | ^~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:261:1: warning: ‘soergeldist’
> defined but not used [-Wunused-function]
> 261 | soergeldist(bytea *a, bytea *b) {
> | ^~~~~~~~~~~
> gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement
> -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security
> -fno-strict-aliasing -fwrapv -fexcess-precision=standard
> -Wno-format-truncation -Wno-stringop-truncation -g -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security
> -fno-omit-frame-pointer -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<<PKGBUILDDIR>>/Code
> -DRDKITVER='"007300"' -I. -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit
> -I/usr/include/postgresql/12/server -I/usr/include/postgresql/internal
> -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2
> -I/usr/include/mit-krb5 -fPIC -c -o bfp_gist.o
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/bfp_gist.c
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/bfp_gist.c: In function ‘merge_key’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/bfp_gist.c:699:3: warning: ISO C90 forbids
> mixed declarations and code [-Wdeclaration-after-statement]
> 699 | int siglen = GBFP_INNER_SIGLEN(result);
> | ^~~
> gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement
> -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security
> -fno-strict-aliasing -fwrapv -fexcess-precision=standard
> -Wno-format-truncation -Wno-stringop-truncation -g -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security
> -fno-omit-frame-pointer -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<<PKGBUILDDIR>>/Code
> -DRDKITVER='"007300"' -I. -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit
> -I/usr/include/postgresql/12/server -I/usr/include/postgresql/internal
> -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2
> -I/usr/include/mit-krb5 -fPIC -c -o bfp_gin.o
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/bfp_gin.c
> gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement
> -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security
> -fno-strict-aliasing -fwrapv -fexcess-precision=standard
> -Wno-format-truncation -Wno-stringop-truncation -g -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security
> -fno-omit-frame-pointer -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<<PKGBUILDDIR>>/Code
> -DRDKITVER='"007300"' -I. -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit
> -I/usr/include/postgresql/12/server -I/usr/include/postgresql/internal
> -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2
> -I/usr/include/mit-krb5 -fPIC -c -o low_gist.o
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/low_gist.c
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/low_gist.c: In function ‘gslfp_consistent’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit
> declaration of function ‘searchSfpCache’ [-Wimplicit-function-declaration]
> 410 | fcinfo->flinfo->fn_extra = searchSfpCache(
> | ^~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/low_gist.c:410:28: warning: assignment to
> ‘void *’ from ‘int’ makes pointer from integer without a cast
> [-Wint-conversion]
> 410 | fcinfo->flinfo->fn_extra = searchSfpCache(
> | ^
> gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement
> -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security
> -fno-strict-aliasing -fwrapv -fexcess-precision=standard
> -Wno-format-truncation -Wno-stringop-truncation -g -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security
> -fno-omit-frame-pointer -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<<PKGBUILDDIR>>/Code
> -DRDKITVER='"007300"' -I. -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit
> -I/usr/include/postgresql/12/server -I/usr/include/postgresql/internal
> -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2
> -I/usr/include/mit-krb5 -fPIC -c -o guc.o
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/guc.c
> gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement
> -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security
> -fno-strict-aliasing -fwrapv -fexcess-precision=standard
> -Wno-format-truncation -Wno-stringop-truncation -g -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security
> -fno-omit-frame-pointer -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<<PKGBUILDDIR>>/Code
> -DRDKITVER='"007300"' -I. -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit
> -I/usr/include/postgresql/12/server -I/usr/include/postgresql/internal
> -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2
> -I/usr/include/mit-krb5 -fPIC -c -o cache.o
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/cache.c
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/cache.c: In function ‘createCache’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/cache.c:312:17: warning: assignment
> discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
> 312 | methodsOrig = ctx->methods;
> | ^
> g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
> -Wno-unused-function -I/usr/local/include -I/<<PKGBUILDDIR>>/Code
> -DRDKITVER='"007300"' -I/usr/local/include -I/<<PKGBUILDDIR>>/Code
> -DRDKITVER='"007300"' -I. -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit
> -I/usr/include/postgresql/12/server -I/usr/include/postgresql/internal
> -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2
> -I/usr/include/mit-krb5 -fPIC -c -o adapter.o
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/adapter.cpp
> gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement
> -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security
> -fno-strict-aliasing -fwrapv -fexcess-precision=standard
> -Wno-format-truncation -Wno-stringop-truncation -g -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security
> -fno-omit-frame-pointer -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<<PKGBUILDDIR>>/Code
> -DRDKITVER='"007300"' -I. -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit
> -I/usr/include/postgresql/12/server -I/usr/include/postgresql/internal
> -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2
> -I/usr/include/mit-krb5 -fPIC -c -o bitstring.o
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/bitstring.c
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/bitstring.c: In function ‘bitstringUnion’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/bitstring.c:72:7: warning: unused variable
> ‘i’ [-Wunused-variable]
> 72 | int i;
> | ^
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/bitstring.c: In function
> ‘bitstringIntersection’:
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/bitstring.c:106:7: warning: unused variable
> ‘i’ [-Wunused-variable]
> 106 | int i;
> | ^
> g++ -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement
> -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security
> -fno-strict-aliasing -fwrapv -fexcess-precision=standard
> -Wno-format-truncation -Wno-stringop-truncation -g -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security
> -fno-omit-frame-pointer -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -fPIC -shared -o rdkit.so rdkit_io.o mol_op.o bfp_op.o
> sfp_op.o rxn_op.o rdkit_gist.o bfp_gist.o bfp_gin.o low_gist.o guc.o cache.o
> adapter.o bitstring.o -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -Wl,-z,now
> -L/usr/lib/llvm-10/lib -L/usr/lib/x86_64-linux-gnu/mit-krb5 -Wl,--as-needed
> -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
> -L/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu//lib -lRDKitMolDraw2D
> -lRDKitMolTransforms -lRDKitMolHash -lRDKitFMCS -lRDKitChemReactions
> -lRDKitChemTransforms -lRDKitFileParsers -lRDKitSmilesParse
> -lRDKitFingerprints -lRDKitSubgraphs -lRDKitDescriptors -lRDKitPartialCharges
> -lRDKitSubstructMatch -lRDKitGraphMol -lRDKitEigenSolvers -lRDKitDataStructs
> -lRDKitDepictor -lRDKitRDGeometryLib -lRDKitRDGeneral -pthread
> sed -e's/@RDKIT_PG_BFP_GIST_FETCH@/FUNCTION 9 gbfp_fetch (internal),/;' \
> -e's/@RDKIT_GIN_BFP_TRICONSISTENT@/FUNCTION 6
> gin_bfp_triconsistent(internal, int2, bfp, int4, internal, internal,
> internal),/' \
> -e's/@RDKIT_PARALLEL_SAFE@/PARALLEL SAFE/' \
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit.sql.in > rdkit--3.8.sql
> /usr/bin/clang-10 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2
> -I/usr/local/include -I/<<PKGBUILDDIR>>/Code -DRDKITVER='"007300"' -I.
> -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit -I/usr/include/postgresql/12/server
> -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2
> -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin
> -emit-llvm -c -o rdkit_io.bc /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_io.c
> /usr/bin/clang-10 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2
> -I/usr/local/include -I/<<PKGBUILDDIR>>/Code -DRDKITVER='"007300"' -I.
> -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit -I/usr/include/postgresql/12/server
> -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2
> -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin
> -emit-llvm -c -o mol_op.bc /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:388:1: warning: non-void function
> does not return a value in all control paths [-Wreturn-type]
> }
> ^
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:408:12: warning: incompatible
> integer to pointer conversion initializing 'CROMol' (aka 'void *') with an
> expression of type 'Datum' (aka 'unsigned long') [-Wint-conversion]
> CROMol mol = PG_GETARG_DATUM(1);
> ^ ~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:436:12: warning: incompatible
> integer to pointer conversion initializing 'CROMol' (aka 'void *') with an
> expression of type 'Datum' (aka 'unsigned long') [-Wint-conversion]
> CROMol mol = PG_GETARG_DATUM(1);
> ^ ~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:504:12: warning: incompatible
> integer to pointer conversion initializing 'CROMol' (aka 'void *') with an
> expression of type 'Datum' (aka 'unsigned long') [-Wint-conversion]
> CROMol mol = PG_GETARG_DATUM(1);
> ^ ~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:515:12: warning: incompatible
> integer to pointer conversion initializing 'CROMol' (aka 'void *') with an
> expression of type 'Datum' (aka 'unsigned long') [-Wint-conversion]
> CROMol mol = PG_GETARG_DATUM(1);
> ^ ~~~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/mol_op.c:523:1: warning: non-void function
> does not return a value in all control paths [-Wreturn-type]
> }
> ^
> 6 warnings generated.
> /usr/bin/clang-10 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2
> -I/usr/local/include -I/<<PKGBUILDDIR>>/Code -DRDKITVER='"007300"' -I.
> -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit -I/usr/include/postgresql/12/server
> -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2
> -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin
> -emit-llvm -c -o bfp_op.bc /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/bfp_op.c
> /usr/bin/clang-10 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2
> -I/usr/local/include -I/<<PKGBUILDDIR>>/Code -DRDKITVER='"007300"' -I.
> -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit -I/usr/include/postgresql/12/server
> -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2
> -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin
> -emit-llvm -c -o sfp_op.bc /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/sfp_op.c
> /usr/bin/clang-10 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2
> -I/usr/local/include -I/<<PKGBUILDDIR>>/Code -DRDKITVER='"007300"' -I.
> -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit -I/usr/include/postgresql/12/server
> -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2
> -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin
> -emit-llvm -c -o rxn_op.bc /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rxn_op.c
> /usr/bin/clang-10 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2
> -I/usr/local/include -I/<<PKGBUILDDIR>>/Code -DRDKITVER='"007300"' -I.
> -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit -I/usr/include/postgresql/12/server
> -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2
> -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin
> -emit-llvm -c -o rdkit_gist.bc /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c
> /usr/bin/clang-10 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2
> -I/usr/local/include -I/<<PKGBUILDDIR>>/Code -DRDKITVER='"007300"' -I.
> -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit -I/usr/include/postgresql/12/server
> -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2
> -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin
> -emit-llvm -c -o bfp_gist.bc /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/bfp_gist.c
> /usr/bin/clang-10 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2
> -I/usr/local/include -I/<<PKGBUILDDIR>>/Code -DRDKITVER='"007300"' -I.
> -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit -I/usr/include/postgresql/12/server
> -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2
> -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin
> -emit-llvm -c -o bfp_gin.bc /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/bfp_gin.c
> /usr/bin/clang-10 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2
> -I/usr/local/include -I/<<PKGBUILDDIR>>/Code -DRDKITVER='"007300"' -I.
> -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit -I/usr/include/postgresql/12/server
> -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2
> -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin
> -emit-llvm -c -o low_gist.bc /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/low_gist.c
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit
> declaration of function 'searchSfpCache' is invalid in C99
> [-Wimplicit-function-declaration]
> fcinfo->flinfo->fn_extra = searchSfpCache(
> ^
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/low_gist.c:410:28: warning: incompatible
> integer to pointer conversion assigning to 'void *' from 'int'
> [-Wint-conversion]
> fcinfo->flinfo->fn_extra = searchSfpCache(
> ^ ~~~~~~~~~~~~~~~
> 2 warnings generated.
> /usr/bin/clang-10 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2
> -I/usr/local/include -I/<<PKGBUILDDIR>>/Code -DRDKITVER='"007300"' -I.
> -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit -I/usr/include/postgresql/12/server
> -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2
> -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin
> -emit-llvm -c -o guc.bc /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/guc.c
> /usr/bin/clang-10 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2
> -I/usr/local/include -I/<<PKGBUILDDIR>>/Code -DRDKITVER='"007300"' -I.
> -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit -I/usr/include/postgresql/12/server
> -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2
> -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin
> -emit-llvm -c -o cache.bc /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/cache.c
> /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/cache.c:312:17: warning: assigning to
> 'MemoryContextMethods *' (aka 'struct MemoryContextMethods *') from 'const
> MemoryContextMethods *' (aka 'const struct MemoryContextMethods *') discards
> qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
> methodsOrig = ctx->methods;
> ^ ~~~~~~~~~~~~
> 1 warning generated.
> /usr/bin/clang-10 -xc++ -Wno-ignored-attributes -fno-strict-aliasing -fwrapv
> -O2 -I/usr/local/include -I/<<PKGBUILDDIR>>/Code -DRDKITVER='"007300"' -I.
> -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit -I/usr/include/postgresql/12/server
> -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2
> -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -emit-llvm -c
> -o adapter.bc /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/adapter.cpp
> In file included from /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/adapter.cpp:54:
> /<<PKGBUILDDIR>>/Code/GraphMol/MolDraw2D/MolDraw2DSVG.h:74:8: warning:
> 'tagAtoms' overrides a member function but is not marked 'override'
> [-Winconsistent-missing-override]
> void tagAtoms(const ROMol &mol) { tagAtoms(mol, 0.2); }
> ^
> /<<PKGBUILDDIR>>/Code/GraphMol/MolDraw2D/MolDraw2D.h:429:16: note: overridden
> virtual function is here
> virtual void tagAtoms(const ROMol &mol) { RDUNUSED_PARAM(mol); };
> ^
> 1 warning generated.
> opt-9 -module-summary -f adapter.bc -o adapter.bc
> make[2]: opt-9: Command not found
> make[2]: *** [/<<PKGBUILDDIR>>/Code/PgSQL/rdkit/Makefile:120: adapter.bc]
> Error 127
The full build log is available from:
http://qa-logs.debian.net/2020/04/02/rdkit_201909.1-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: rdkit
Source-Version: 201909.1-3
Done: Andrius Merkys <mer...@debian.org>
We believe that the bug you reported is fixed in the latest version of
rdkit, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 955...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <mer...@debian.org> (supplier of updated rdkit package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 06 Apr 2020 09:34:18 -0400
Source: rdkit
Architecture: source
Version: 201909.1-3
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Andrius Merkys <mer...@debian.org>
Closes: 945985 955669
Changes:
rdkit (201909.1-3) unstable; urgency=medium
.
* Team upload.
* Fixing FTBFS with llvm-10 (Closes: #955669).
* Replacing libschroedinger-maeparser-dev with libmaeparser-dev
(Closes: #945985).
* Bumping versioned build-depends of libschroedinger-coordgenlibs-dev.
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rdkit_201909.1-3_source.buildinfo
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Files:
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rdkit_201909.1-3.debian.tar.xz
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rdkit_201909.1-3_source.buildinfo
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