Your message dated Tue, 03 Mar 2020 09:04:47 +0000
with message-id <e1j93tr-0007wn...@fasolo.debian.org>
and subject line Bug#952747: fixed in libbio-alignio-stockholm-perl 1.7.3-2
has caused the Debian Bug report #952747,
regarding libbio-alignio-stockholm-perl: missing Breaks+Replaces: 
libbio-perl-perl (<< 1.7.3)
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
952747: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=952747
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libbio-alignio-stockholm-perl
Version: 1.7.3-1
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts

Hi,

during a test with piuparts I noticed your package fails to upgrade from
'stable'.
It installed fine in 'stable', then the upgrade to 'sid' fails
because it tries to overwrite other packages files without declaring a
Breaks+Replaces relation.

See policy 7.6 at
https://www.debian.org/doc/debian-policy/ch-relationships.html#overwriting-files-and-replacing-packages-replaces

This test intentionally skipped 'testing' to find file overwrite
problems before packages migrate from 'unstable' to 'testing'.

>From the attached log (scroll to the bottom...):

  Preparing to unpack .../libbio-alignio-stockholm-perl_1.7.3-1_all.deb ...
  Unpacking libbio-alignio-stockholm-perl (1.7.3-1) ...
  dpkg: error processing archive 
/var/cache/apt/archives/libbio-alignio-stockholm-perl_1.7.3-1_all.deb 
(--unpack):
   trying to overwrite '/usr/share/man/man3/Bio::AlignIO::stockholm.3pm.gz', 
which is also in package libbio-perl-perl 1.7.2-3
  Errors were encountered while processing:
   /var/cache/apt/archives/libbio-alignio-stockholm-perl_1.7.3-1_all.deb

IIRC, libbio-perl-perl 1.7.3 was the version that got split up.


cheers,

Andreas

Attachment: libbio-perl-perl=1.7.2-3_libbio-alignio-stockholm-perl=1.7.3-1.log.gz
Description: application/gzip


--- End Message ---
--- Begin Message ---
Source: libbio-alignio-stockholm-perl
Source-Version: 1.7.3-2
Done: Andreas Tille <ti...@debian.org>

We believe that the bug you reported is fixed in the latest version of
libbio-alignio-stockholm-perl, which is due to be installed in the Debian FTP 
archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 952...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated 
libbio-alignio-stockholm-perl package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Hash: SHA256

Format: 1.8
Date: Tue, 03 Mar 2020 09:00:01 +0100
Source: libbio-alignio-stockholm-perl
Architecture: source
Version: 1.7.3-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 952747
Changes:
 libbio-alignio-stockholm-perl (1.7.3-2) unstable; urgency=medium
 .
   * Team upload.
   * Add missing Breaks+Replaces: libbio-perl-perl (<< 1.7.3)
     Closes: #952747
   * Add salsa-ci file (routine-update)
Checksums-Sha1:
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libbio-alignio-stockholm-perl_1.7.3-2.dsc
 9b80b333ca155afb28773df1dab39eec5da38f0d 1780 
libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz
 998a51da38c5bc7d6a3e06dd0f1cceeafa5dd056 6172 
libbio-alignio-stockholm-perl_1.7.3-2_amd64.buildinfo
Checksums-Sha256:
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libbio-alignio-stockholm-perl_1.7.3-2.dsc
 f6f3683dc8b27bda0ecfe5cd4ce65bc01911798ed54e29a167fa7928d43cafe8 1780 
libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz
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libbio-alignio-stockholm-perl_1.7.3-2_amd64.buildinfo
Files:
 778d179ea09e14a5de772dc9b5fe3e17 2284 perl optional 
libbio-alignio-stockholm-perl_1.7.3-2.dsc
 6b5bada7af9da7f04f9c73591dcef594 1780 perl optional 
libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz
 2cd532bfc7bb7d777d55bedaf6934f05 6172 perl optional 
libbio-alignio-stockholm-perl_1.7.3-2_amd64.buildinfo

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