Your message dated Sun, 23 Feb 2020 16:34:28 +0000 with message-id <e1j5ud6-00073y...@fasolo.debian.org> and subject line Bug#951952: fixed in hdf5 1.10.4+repack-11 has caused the Debian Bug report #951952, regarding hdf5: FTBFS: ../../../src/H5Smpio.c:1503:9: error: call to ‘MPI_Type_extent’ declared with attribute error: MPI_Type_extent was removed in MPI-3.0. Use MPI_Type_get_extent instead. to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 951952: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=951952 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: hdf5 Version: 1.10.4+repack-10 Severity: serious Justification: FTBFS on amd64 Tags: buster sid Usertags: ftbfs-20200222 ftbfs-buster Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > /bin/bash ../libtool --tag=CC --mode=link mpicc.openmpi -std=c99 > -pedantic -Wall -Wextra -Wbad-function-cast -Wc++-compat -Wcast-align > -Wcast-qual -Wconversion -Wdeclaration-after-statement > -Wdisabled-optimization -Wfloat-equal -Wformat=2 -Winit-self -Winvalid-pch > -Wmissing-declarations -Wmissing-include-dirs -Wmissing-prototypes > -Wnested-externs -Wold-style-definition -Wpacked -Wpointer-arith > -Wredundant-decls -Wshadow -Wstrict-prototypes -Wswitch-default -Wswitch-enum > -Wundef -Wunused-macros -Wunsafe-loop-optimizations -Wwrite-strings > -finline-functions -s -Wno-inline -Wno-aggregate-return > -Wno-missing-format-attribute -Wno-missing-noreturn -O -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wl,--version-script,../../../debian/map_mpi.ver > -Wl,-z,relro -o H5make_libsettings H5make_libsettings.o -lsz -lz -ldl -lm > ../../../src/H5Smpio.c:1503:9: error: call to ‘MPI_Type_extent’ declared with > attribute error: MPI_Type_extent was removed in MPI-3.0. Use > MPI_Type_get_extent instead. > 1503 | MPI_Type_extent (old_type, &old_extent); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > ../../../src/H5Smpio.c: In function ‘H5S_mpio_hyper_type’: > ../../../src/H5Smpio.c:882:13: error: call to ‘MPI_Type_extent’ declared with > attribute error: MPI_Type_extent was removed in MPI-3.0. Use > MPI_Type_get_extent instead. > 882 | MPI_Type_extent (inner_type, &inner_extent); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > make[4]: *** [Makefile:1603: H5Smpio.lo] Error 1 The full build log is available from: http://qa-logs.debian.net/2020/02/22/hdf5_1.10.4+repack-10_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Source: hdf5 Source-Version: 1.10.4+repack-11 Done: Gilles Filippini <p...@debian.org> We believe that the bug you reported is fixed in the latest version of hdf5, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 951...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Gilles Filippini <p...@debian.org> (supplier of updated hdf5 package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sun, 23 Feb 2020 16:36:59 +0100 Source: hdf5 Architecture: source Version: 1.10.4+repack-11 Distribution: unstable Urgency: medium Maintainer: Debian GIS Project <pkg-grass-de...@lists.alioth.debian.org> Changed-By: Gilles Filippini <p...@debian.org> Closes: 951952 Changes: hdf5 (1.10.4+repack-11) unstable; urgency=medium . * New patch drop-deprecated-mpi-1-api.patch (closes: #951952) This patch backports three upstream commits fixing deprecated MPI-1 function calls Checksums-Sha1: 87f0f77f60ba2c2fbf396742627b966f85fc864b 2620 hdf5_1.10.4+repack-11.dsc 0238d3b44b9e439dff1c6c351517a37ff13d638a 134344 hdf5_1.10.4+repack-11.debian.tar.xz 49e02c13ed11dbf0cbf6af5ee784b1ee4eba1ebd 16355 hdf5_1.10.4+repack-11_amd64.buildinfo Checksums-Sha256: 8daaaa141f38427d8f1440273edacd85153fca5902f2e0e8adbdb3f6ada5c92a 2620 hdf5_1.10.4+repack-11.dsc ddbdbabd8d4edc8ba1832a05541ae177064e063fa2f1a94bb2b5ace91c9039bd 134344 hdf5_1.10.4+repack-11.debian.tar.xz 129d0052edd99c89aa0b38dcea18e161b3f180f778bd2971bca2d0fce196c8b9 16355 hdf5_1.10.4+repack-11_amd64.buildinfo Files: 32cae4a9dd2362e9a4a42afe26e1e5bc 2620 science optional hdf5_1.10.4+repack-11.dsc 4bdbe9ce4313f4fe9604cd6c71813516 134344 science optional hdf5_1.10.4+repack-11.debian.tar.xz c84dcfb4315762ddf4190699020fdaf9 16355 science optional hdf5_1.10.4+repack-11_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQFEBAEBCgAuFiEEoJObzArDE05WtIyR7+hsbH/+z4MFAl5SpNsQHHBpbmlAZGVi aWFuLm9yZwAKCRDv6Gxsf/7Pg1SuB/sG2TZ099Fy3KMRt6jLeAKNgtwZF1bJ+ada dK8Q2quxz57ZiJgpcVSrPl7kseCRrQwTFD+qMtfogn0T8elVrsHMJQ1PIyn8XF6w 3hABRIjQ6YXHjfvWCZ7A++4PyZJIXFW3tI7brj0qh4/ZawhhRFZpsvZn1D8Hq4ta zbr/M7IAMwPY5yQuvDDqhOTmFhgKw8NQj/9WpaRjsMRfZ6GDwXCNlVAs0tro8Go/ Zkrz4a6oRhKZuA8NenGS1v8GvQDvCvOPuIP8XwJCkOEZPVg7O18woUUzRGLs4Eih kn147Dx0SQOF658pgdNEptuBoJyUWS7TN/cexMR4c7PAwYYGS0kY =aMo9 -----END PGP SIGNATURE-----
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