Hi Aaron,
I used routine-update[1] to update the packaging of ncbi-entrez-direct.
Since this includes a new upstream version I'm hesitating with uploading
and thus stopped working on this bug.
The build now fails with
...
dh_auto_build
install amino-acid-composition archive-pubmed between-two-genes
entrez-phrase-search fetch-pubmed filter-stop-words index-pubmed
intersect-uid-lists join-into-groups-of pm-* protein-neighbors reorder-columns
sort-uniq-count* stream-pubmed word-at-a-time xy-plot debian/efetch
debian/einfo bin/
mkdir -p
/build/ncbi-entrez-direct-13.3.20200128+ds/obj-x86_64-linux-gnu/src/github.com/fiam
ln -s ../rainycape
/build/ncbi-entrez-direct-13.3.20200128+ds/obj-x86_64-linux-gnu/src/github.com/fiam/gounidecode
go build -v -gccgoflags '-g -O2
-fdebug-prefix-map=/build/ncbi-entrez-direct-13.3.20200128+ds=.
-fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro
-Wl,-z,now -Wl,--as-needed' -o bin/xtract \
xtract.go common.go
failed to initialize build cache at /nonexistent/.cache/go-build: mkdir
/nonexistent: permission denied
make[1]: *** [debian/rules:84: override_dh_auto_build] Error 1
...
I think that's just a matter of setting $HOME to something sensible and
is probably less than 10min work for you. Could you please take over
from here?
Kind regards
Andreas.
[1]
https://salsa.debian.org/r-pkg-team/maintenance-utilities/blob/master/routine-update
--
http://fam-tille.de
