Your message dated Tue, 28 Jan 2020 11:51:02 +0000
with message-id <e1iwpoy-000cyz...@fasolo.debian.org>
and subject line Bug#949542: fixed in pbdagcon 0.3+git20180411.c14c422+dfsg-1
has caused the Debian Bug report #949542,
regarding src:pbdagcon: FTBFS with pbseqlib 5.3.3+dfsg-1
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
949542: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=949542
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:pbdagcon
Version: 0.3+git20161121.0000000+ds-1.1
Severity: serious
Justification: FTBFS
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Hi,
Pbdagcon FTBFS when built against pbseqlib 5.3.3+dfsg-1:
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic
-Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/<<PKGBUILDDIR>>/DAZZ_DB
-I/<<PKGBUILDDIR>>/DALIGNER -I/usr/include/pbseq/alignment
-I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq
-isystem.//third-party -c -o main.o main.cpp
In file included from SimpleAligner.hpp:5,
from main.cpp:24:
/usr/include/pbseq/pbdata/DNASequence.hpp:4:10: fatal error: LibBlasrConfig.h:
No such file or directory
4 | #include <LibBlasrConfig.h>
| ^~~~~~~~~~~~~~~~~~
compilation terminated.
The missing header LibBlasrConfig.h used to be part of libpbdata-dev.
Thanks,
_g.
- -- System Information:
Debian Release: buster/sid
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 5.4.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8),
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
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--- End Message ---
--- Begin Message ---
Source: pbdagcon
Source-Version: 0.3+git20180411.c14c422+dfsg-1
We believe that the bug you reported is fixed in the latest version of
pbdagcon, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 949...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated pbdagcon package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 28 Jan 2020 11:13:47 +0100
Source: pbdagcon
Architecture: source
Version: 0.3+git20180411.c14c422+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 937254 949542
Changes:
pbdagcon (0.3+git20180411.c14c422+dfsg-1) unstable; urgency=medium
.
* Add myself to Uploaders to have at least one human uploader after
Afif removed himself.
* Run 2to3 on Python2 files to try a Python3 port
Closes: #937254
* New upstream version
* debhelper-compat 12
* Standards-Version: 4.5.0
* Build-Depends: s/python/python3/
* Build-Depends: libpbcopper-dev, libpbihdf-dev
* Replace outdated code copies of DAZZ_DB
Closes: #949542
* Latest libpbihdf and libpbdata are header only libs
* Drop outdated copy of DAZZ_DB here
* Recommend creating a real library in README.source
* Versioned (Build-)Depends
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