Your message dated Tue, 14 Jan 2020 07:19:11 +0000 with message-id <e1irgtn-0006ez...@fasolo.debian.org> and subject line Bug#948849: fixed in diamond-aligner 0.9.29+dfsg-4 has caused the Debian Bug report #948849, regarding diamond-aligner: missing Breaks+Replaces: diamond to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 948849: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=948849 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: diamond-aligner Version: 0.9.29+dfsg-2 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'stable'. It installed fine in 'stable', then the upgrade to 'sid' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at https://www.debian.org/doc/debian-policy/ch-relationships.html#overwriting-files-and-replacing-packages-replaces This test intentionally skipped 'testing' to find file overwrite problems before packages migrate from 'unstable' to 'testing'. >From the attached log (scroll to the bottom...): Preparing to unpack .../diamond-aligner_0.9.29+dfsg-2_amd64.deb ... Unpacking diamond-aligner (0.9.29+dfsg-2) ... dpkg: error processing archive /var/cache/apt/archives/diamond-aligner_0.9.29+dfsg-2_amd64.deb (--unpack): trying to overwrite '/usr/bin/diamond', which is also in package diamond 4.0.515-5 dpkg-deb: error: paste subprocess was killed by signal (Broken pipe) Errors were encountered while processing: /var/cache/apt/archives/diamond-aligner_0.9.29+dfsg-2_amd64.deb The diamond package which shipped /usr/bin/diamond in buster no longer exists in bullseye and sid, thus diamond-aligner is free to take over the command name, but it needs to ensure that the obsolete package gets removed. cheers, Andreas
diamond=4.0.515-5_diamond-aligner=0.9.29+dfsg-2.log.gz
Description: application/gzip
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--- Begin Message ---Source: diamond-aligner Source-Version: 0.9.29+dfsg-4 We believe that the bug you reported is fixed in the latest version of diamond-aligner, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 948...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated diamond-aligner package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 14 Jan 2020 08:03:08 +0100 Source: diamond-aligner Architecture: source Version: 0.9.29+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 948849 Changes: diamond-aligner (0.9.29+dfsg-4) unstable; urgency=medium . * Breaks+Replaces: diamond Closes: #948849 Checksums-Sha1: f9df0d93636ad2a4e59bcdd5994e5d48c023196c 2076 diamond-aligner_0.9.29+dfsg-4.dsc 1c2cd655c9ce7bfde206274fd0ebe4d44dd9dcf5 7580 diamond-aligner_0.9.29+dfsg-4.debian.tar.xz 9d9e0425edb4c9fd5905de8e99517adbe1f85231 6888 diamond-aligner_0.9.29+dfsg-4_amd64.buildinfo Checksums-Sha256: 110784c7939fccb90c3fc6cc1f0d133758816b7970db3837027ee2a5fe5a882c 2076 diamond-aligner_0.9.29+dfsg-4.dsc aa7434472e71fa9c2d4f476b4573eeae9406c9918877db6654a5adfabfcd28c3 7580 diamond-aligner_0.9.29+dfsg-4.debian.tar.xz a0936a27dd31e33988c48958a7b90f80a0134fd7586f08e08794f46091acc7fc 6888 diamond-aligner_0.9.29+dfsg-4_amd64.buildinfo Files: f7e59c373b7a10830603e5798cac25ae 2076 science optional diamond-aligner_0.9.29+dfsg-4.dsc 205582a4ec0b6fee23d893cdb86e7094 7580 science optional diamond-aligner_0.9.29+dfsg-4.debian.tar.xz 0ce4522132c570691dacc0ef3a5a4c40 6888 science optional diamond-aligner_0.9.29+dfsg-4_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl4daJURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGYEg/7BbG6ArpjSq0e27hhBObaXZVoTN31kclO aiCh0wyMNuoeFd26BmNmxqnpqawnzb0BB2h27eLPYzzw8D94g71OmulaL1Snovi/ 8kFbCZ61puJwCtYzxiI6ijmmzWHYevzbkkYYaVvRIU15g8wdq12vycLIFa9Tn6Jy BRtrz5f6twEbtrCmX8JYNxc0a5T0bqo5iFel9YOeZwvm+HB5npH3cKJdUskcwbQa yY1AU50VUYTfVagHL84oPW3gcFY8gWkjorR9fHLiSPPEOXybviFxhGJSPVgq0EmS BE4zFWgf65+/2T6G+CyhIdrA0SSqtwsNvy+Z5KJ4qSEcd1qVnAo3rm6xPjuPvjOT AtKaGDT5QlhWwpb0bPc61Sx5q+bRcKk/OYAEWO/g1zl/X3sNjpGrwvizU1nWa4f5 k+UGb2cwm4ifu75MYo0cdBek0JMl9yrvz4Ggszgn9PgxN1V2bReKAzAV1YgnTT6M cu2qjXVS59acZxxKLL3kMK53G5jjKS0Y8u09rxQEpBIsEIDBGt9u38kTY/5//dXO TCCrN2s51uU9a3CkbcCbYAC91uWw6gjQrXRUHJ9z4RP1Twg204vFq2/j6zNLIYz9 d/uAQeofkbcmQ0jo1+wgLqMNTolx9YrIoduGstgmH87OFyJofZlL/PofZzZFtwYq R4mfwn+y8h4= =OKJU -----END PGP SIGNATURE-----
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