Your message dated Wed, 18 Dec 2019 15:35:33 +0000
with message-id <e1ihbml-000aq4...@fasolo.debian.org>
and subject line Bug#943619: fixed in python-skbio 0.5.5-3
has caused the Debian Bug report #943619,
regarding test failures when running with python3.8
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
943619: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=943619
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:python-skbio
Version: 0.5.5-2
Severity: important
Tags: sid bullseye
User: debian-pyt...@lists.debian.org
Usertags: python3.8
test failures when running with python3.8:
======================================================================
ERROR: test_munging_invalid_type_to_self_type
(skbio.sequence.tests.test_sequence.TestDistance)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_sequence.py",
line 2369, in test_munging_invalid_type_to_self_type
Sequence("ACGT").distance(42)
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_sequence.py",
line 1539, in distance
other = self._munge_to_self_type(other, 'distance')
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_sequence.py",
line 2161, in _munge_to_self_type
return self.__class__(other)
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_sequence.py",
line 622, in __init__
s = np.frombuffer(sequence, dtype=np.uint8)
TypeError: a bytes-like object is required, not 'int'
======================================================================
ERROR: test_init_invalid_sequence
(skbio.sequence.tests.test_sequence.TestSequence)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_sequence.py",
line 465, in test_init_invalid_sequence
Sequence(('a', 'b', 'c'))
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_sequence.py",
line 622, in __init__
s = np.frombuffer(sequence, dtype=np.uint8)
TypeError: a bytes-like object is required, not 'tuple'
----------------------------------------------------------------------
Ran 2340 tests in 61.773s
FAILED (SKIP=30, errors=2)
E: pybuild pybuild:341: test: plugin distutils failed with: exit code=1: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_skbio/build; python3.8 -m nose -v
dh_auto_test: pybuild --test --test-nose -i python{version} -p "3.8 3.7"
returned exit code 13
make: *** [debian/rules:13: build] Error 255
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
full build log
https://launchpad.net/ubuntu/+source/python-skbio/0.5.5-2build1/+build/17952712
--- End Message ---
--- Begin Message ---
Source: python-skbio
Source-Version: 0.5.5-3
We believe that the bug you reported is fixed in the latest version of
python-skbio, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 943...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated python-skbio package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 18 Dec 2019 16:02:13 +0100
Source: python-skbio
Architecture: source
Version: 0.5.5-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 943619 944042 945346
Changes:
python-skbio (0.5.5-3) unstable; urgency=medium
.
* Apply patch from upstream titled
"WIP: Build fixes for pandas 0.25.0 and scipy 1.3.0"
* Versioned Build-Depends: python3-scipy (>= 1.3.3)
* debhelper-compat 12
* Standards-Version: 4.4.1
* Set upstream metadata fields: Repository, Repository-Browse.
* Set upstream metadata fields: Bug-Database, Repository.
* Ignore 4 tests to not block Python3 migration
Closes: #943619, #944042, #945346
* Drop python3-httpretty from Test-Depends since there is no point in
trying to run tests that need internet access.
* Drop two tests from autopkgtest that are failing due to rounding errors
despite this is fixed in build time test by a patch
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--- End Message ---
