On Sun, Dec 15, 2019 at 3:18 AM Matthias Klumpp <matth...@tenstral.net> wrote:
> Am Do., 28. Nov. 2019 um 16:37 Uhr schrieb Pjotr Prins < > pjotr2...@thebird.nl>: > > > > When 1.18 arrives I think it is a good time to get sambamba and biod > > in Debian again. > > They always were in Debian, just not in a release because the packages > were broken ^^ > The LDC transition went really well this time, I don't think it has > ever been this smooth! No regressions this time, hurray! > Huzzah, indeed! > There are also two brand new remaining issues: Apparently, for some > reason, SONAME isn't set correctly for BioD, producing a Lintian error > - not sure what happens there, and which component is to blame for > that (Meson or LDC, most likely). Also, Sambamba doesn't *actually* > build yet: > ``` > roup -L=-rpath > -L=/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu > slicereader.d:71: error: undefined reference to 'cram_to_bam' > collect2: error: ld returned 1 exit status > ``` > The cram_to_bam is private in htslib, so it shouldn't be used by other > applications. Not sure whether htslib or Sambamba needs to be changed > here, I simply worked around this issue for testing, and when this is > resolved, Sambamba builds & works. > You'll be wanting libhts-private-dev, but libhts is broken in unstable right now; sorry! -- Michael R. Crusoe
