Your message dated Tue, 10 Dec 2019 14:28:23 +0100
with message-id <7f7e91b2fbf2e2e62f43bbf5806657684b346217.ca...@gmail.com>
and subject line itksnap: FTBFS with current insighttoolkit4 and gdcm
has caused the Debian Bug report #945484,
regarding itksnap: FTBFS with current insighttoolkit4 and gdcm
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
945484: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945484
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: itksnap
Version: 3.6.0-3
Severity: serious
User: ubuntu-de...@lists.ubuntu.com
Usertags: origin-ubuntu focal
Dear maintainers,
The itksnap package is not buildable in unstable with the current
insighttoolkit4 and gdcm:
[...]
[100%] Building CXX object
CMakeFiles/Test_OrientationWidget.dir/GUI/Renderer/OrientationWidget/Test_OrientationWidget/moc_OrientationWidgetGUI.cpp.o
/usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -DQT_CONCURRENT_LIB
-DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB
-DQT_QML_LIB -DQT_WIDGETS_LIB
-DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)"
-DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)"
-DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)"
-DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)"
-DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)"
-DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)"
-DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)"
-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)"
-DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)"
-DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)"
-DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)"
-I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration
-I/usr/include/hdf5/serial -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti
-I/usr/include/double-conversion -I/usr/include/vtk-6.3
-I/usr/include/freetype2 -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi
-I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/hdf5/openmpi
-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/python2.7
-I/usr/lib/cmake/ITK-4.12/Utilities/zlib -I/<<PKGBUILDDIR>>/Common
-I/<<PKGBUILDDIR>>/Common/ITKExtras -I/<<PKGBUILDDIR>>/Logic
-I/<<PKGBUILDDIR>>/Logic/Common -I/<<PKGBUILDDIR>>/Logic/Framework
-I/<<PKGBUILDDIR>>/Logic/ImageWrapper -I/<<PKGBUILDDIR>>/Logic/LevelSet
-I/<<PKGBUILDDIR>>/Logic/Mesh -I/<<PKGBUILDDIR>>/Logic/Preprocessing
-I/<<PKGBUILDDIR>>/Logic/Preprocessing/GMM
-I/<<PKGBUILDDIR>>/Logic/Preprocessing/Texture
-I/<<PKGBUILDDIR>>/Logic/RLEImage -I/<<PKGBUILDDIR>>/Logic/Slicing
-I/<<PKGBUILDDIR>>/Submodules/c3d/itkextras/RandomForest
-I/<<PKGBUILDDIR>>/Submodules/c3d/api -I/<<PKGBUILDDIR>>/Submodules/greedy/src
-I/<<PKGBUILDDIR>>/GUI -I/<<PKGBUILDDIR>>/GUI/Model
-I/<<PKGBUILDDIR>>/GUI/Renderer
-I/<<PKGBUILDDIR>>/GUI/Renderer/OrientationWidget/Reorient
-I/<<PKGBUILDDIR>>/GUI/Qt -I/<<PKGBUILDDIR>>/GUI/Qt/Components
-I/<<PKGBUILDDIR>>/GUI/Qt/Coupling -I/<<PKGBUILDDIR>>/GUI/Qt/External
-I/<<PKGBUILDDIR>>/GUI/Qt/External/ColorWheel
-I/<<PKGBUILDDIR>>/GUI/Qt/ModelView -I/<<PKGBUILDDIR>>/GUI/Qt/Testing
-I/<<PKGBUILDDIR>>/GUI/Qt/View -I/<<PKGBUILDDIR>>/GUI/Qt/Windows
-I/<<PKGBUILDDIR>>/GUI/Qt/Windows/MeshExportWizard
-I/<<PKGBUILDDIR>>/GUI/Qt/Windows/Registration -I/<<PKGBUILDDIR>>/Testing/Logic
-I/<<PKGBUILDDIR>>/Testing/GUI/Qt -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
-isystem /usr/include/gdcm-2.8 -isystem /usr/include/ITK-4.12 -isystem
/usr/include/x86_64-linux-gnu/qt5 -isystem
/usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem
/usr/include/x86_64-linux-gnu/qt5/QtGui -isystem
/usr/include/x86_64-linux-gnu/qt5/QtCore -isystem
/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem
/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -isystem
/usr/include/x86_64-linux-gnu/qt5/QtConcurrent -isystem
/usr/include/x86_64-linux-gnu/qt5/QtQml -isystem
/usr/include/x86_64-linux-gnu/qt5/QtNetwork -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -fPIC -funroll-loops -ftree-vectorize -Wdate-time
-D_FORTIFY_SOURCE=2 -fPIC -std=gnu++11 -o
CMakeFiles/Test_OrientationWidget.dir/GUI/Renderer/OrientationWidget/Test_OrientationWidget/moc_OrientationWidgetGUI.cpp.o
-c
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/GUI/Renderer/OrientationWidget/Test_OrientationWidget/moc_OrientationWidgetGUI.cpp
In file included from /<<PKGBUILDDIR>>/GUI/Model/ColorLabelPropertyModel.h:6,
from /<<PKGBUILDDIR>>/Logic/Framework/GlobalState.h:57,
from /<<PKGBUILDDIR>>/GUI/Qt/Windows/MainImageWindow.h:31,
from /<<PKGBUILDDIR>>/GUI/Qt/main.cxx:15:
/<<PKGBUILDDIR>>/Logic/Common/ColorLabelTable.h:60:39: warning: dynamic
exception specifications are deprecated in C++11 [-Wdeprecated]
60 | void LoadFromFile(const char *file) throw(itk::ExceptionObject);
| ^~~~~
/<<PKGBUILDDIR>>/Logic/Common/ColorLabelTable.h:61:43: warning: dynamic
exception specifications are deprecated in C++11 [-Wdeprecated]
61 | void SaveToFile(const char *file) const throw(itk::ExceptionObject);
| ^~~~~
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:439:
CMakeFiles/Test_OrientationWidget.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:869: CMakeFiles/ITK-SNAP.dir/all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[1]: *** [Makefile:166: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
dh_auto_build: cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install
--strip-program=true" returned exit code 2
[...]
(https://launchpad.net/ubuntu/+source/itksnap/3.6.0-3build1/+build/18031852)
It is unclear to me what is failing, since there are no errors in the build
log prior to the errors from make.
Please note that itksnap has been removed from testing at some point,
allowing the new insighttoolkit4 + gdcm to transition there, but somehow
this never resulted in an RC bug filed against itksnap.
--
Steve Langasek Give me a lever long enough and a Free OS
Debian Developer to set it on, and I can move the world.
Ubuntu Developer https://www.debian.org/
slanga...@ubuntu.com vor...@debian.org
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--- End Message ---
--- Begin Message ---
Control: reassign -1 insighttoolkit4 4.13.2-dfsg1-1
Version: insighttoolkit4 4.13.2-dfsg1-6
This was actually a bug in ITK and now it works again.
--- End Message ---
