Your message dated Fri, 22 Nov 2019 21:04:16 +0000 with message-id <e1iyg6c-000ava...@fasolo.debian.org> and subject line Bug#945311: fixed in bbmap 38.73+dfsg-1 has caused the Debian Bug report #945311, regarding bbmap: Sources ship binary objects to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 945311: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945311 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: bbmap Version: 38.63+dfsg-1 Severity: serious $ file jni/*.o jni/*.dylib jni/BBMergeOverlapper.o: ELF 64-bit LSB relocatable, x86-64, version 1 (SYSV), not stripped jni/BandedAlignerJNI.o: ELF 64-bit LSB relocatable, x86-64, version 1 (SYSV), not stripped jni/IceCreamAlignerJNI.o: ELF 64-bit LSB relocatable, x86-64, version 1 (SYSV), not stripped jni/MultiStateAligner11tsJNI.o: ELF 64-bit LSB relocatable, x86-64, version 1 (SYSV), not stripped jni/libbbtoolsjni.dylib: Mach-O 64-bit x86_64 dynamically linked shared library, flags:<NOUNDEFS|DYLDLINK|TWOLEVEL|NO_REEXPORTED_DYLIBS> bunk@localhost:/tmp/bbmap-38.63+dfsg$ less jni/libbbtoolsjni.dylib $ The .o objects are rebuilt after removing them manually, so adding *.o and *.dylib to Files-Excluded: should fix it.
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--- Begin Message ---Source: bbmap Source-Version: 38.73+dfsg-1 We believe that the bug you reported is fixed in the latest version of bbmap, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 945...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated bbmap package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 22 Nov 2019 21:31:47 +0100 Source: bbmap Binary: bbmap bbmap-jni Architecture: source Version: 38.73+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: bbmap - short read aligner and other bioinformatic tools bbmap-jni - short read aligner and other bioinformatic tools - JNI library Closes: 945311 Changes: bbmap (38.73+dfsg-1) unstable; urgency=medium . * Files-Excluded: *.o *.dylib (Thanks to Adrian Bunk for spotting this) Closes: #945311 * New upstream version * Standards-Version: 4.4.1 * Use secure URI in debian/watch. Checksums-Sha1: dd7dbf96b0f6ead0056234884e249fa38135e2d3 2051 bbmap_38.73+dfsg-1.dsc abb64084bf422c785cdf67217054cfe8570bc228 7925676 bbmap_38.73+dfsg.orig.tar.xz eb330c719b6e8cf4ff76f413a35dcb90c2678ab6 22560 bbmap_38.73+dfsg-1.debian.tar.xz Checksums-Sha256: 0eca8b86f42c60be46a7ce838374578a4322b853e3f9519740fc7420af290e84 2051 bbmap_38.73+dfsg-1.dsc 3028990949e7e0a16ec5725eb253dc9e27d8ef0629dd8d17c291e3031f4673a5 7925676 bbmap_38.73+dfsg.orig.tar.xz 10bfd777b70945f93e7363f71b5e4f96f10b0eafdc11473ae9a20dc14316f625 22560 bbmap_38.73+dfsg-1.debian.tar.xz Files: abcda070fa54163f6ee8b91c5342405e 2051 science optional bbmap_38.73+dfsg-1.dsc 1c0e09be6b1008cdf0122b202cc27aac 7925676 science optional bbmap_38.73+dfsg.orig.tar.xz 8b08d004999fabeef7896c0bda112f18 22560 science optional bbmap_38.73+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl3YR/sRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG8FRAAiNwnA3ZDkAcfhmUAZSvyRh6mCSzcbMSJ Sdh/V0crNIf8WUCe/9LW45UHDrF2VRjOxl35Mdhr5NQD75O3X3kg4NoxtNYK4JyS JZroSKW0ijveiROAVDgPAfny8eZwOyeNdqQKyjsKjFyGOjtq1E3b5SpSyQDHWr1N Plqmd2B7QOcbVwKkTQ5/We2wAxHMNB70jVd6WN/6OYAfBnbi0tpcnQYPoFTwuWqx 39GUDOS3O2YeX0VL5EvKugR98siMmkAfJ/UQF5j2Vo8oMPtXxv263whxSfVTK01n 1T1xS+M3nIwQk3EGBm06+Zn7JsnCp6BlmUxy/qCFZYHB/2T49DwXqyPlV1sKT6Ek Sx3R+dQ+R65FCYSXXE5XMkBlWJJhlksM/V3R8TPHVct+y2yGTBvV6cht34KwL4Yg xM7xpB0mRrcHlj5btXmMbmT72M9BPVEwu6rMo/f6SbQ7q1apH46UClONZff7RbzA yHzaHL80VZV7XUX0Xx9vMw7fguqLLrtAUHT10FKmO8dKg2A9oDkfiFlDC3V9DJob FlnDO0vnidsUZBzmfLTZCWm8TEBb1nceBYfzr53apOruXcuJtNhB5dEsb/igXbC5 j3o6GP9wANsV5qVWkTtmjbkASIIjg4HQTFllJi9X6t+CSqBQXroKyDpZT1QDlZ7W 8LGdsnnt+dE= =CTPE -----END PGP SIGNATURE-----
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