Thanks, this has probably been solved in https://github.com/r-spatial/sf/pull/1154
and will be in the next release. On 11/21/19 9:38 PM, Andreas Tille wrote: > Control: tags -1 upstream > Control: forwarded -1 Edzer Pebesma <edzer.pebe...@uni-muenster.de> > > > Hi Edzer, > > as you can read below there is a test suite regression in Ubuntu for > the armhf architecture. Do you have any idea how this can be fixed? > > Kind regards > > Andreas. > > > On Thu, Nov 21, 2019 at 11:08:59AM -0800, Steve Langasek wrote: >> Source: r-cran-sf >> Version: 0.8-0+dfsg-1 >> Severity: serious >> User: ubuntu-de...@lists.ubuntu.com >> Usertags: origin-ubuntu focal >> >> Hi Andreas, >> >> With the upload of r-cran-sf 0.8-0+dfsg-1, the autopkgtests are failing in >> Ubuntu only on armhf due to a regression in alignment handling: >> >> [...] >> Attribute-geometry relationship: 0 constant, 1 aggregate, 1 identity >> geometry type: MULTIPOLYGON >> dimension: XY >> bbox: xmin: 0 ymin: 0 xmax: 1 ymax: 1 >> epsg (SRID): NA >> proj4string: NA >> Group.1 a geometry >> 1 1 1.5 MULTIPOLYGON (((0 0, 1 0, 1... >>> (a = aggregate(s, list(c(1,1)), mean, do_union = TRUE)) >> Bus error (core dumped) >> autopkgtest [11:32:17]: test run-unit-test: -----------------------] >> [...] >> >> >> (https://objectstorage.prodstack4-5.canonical.com/v1/AUTH_77e2ada1e7a84929a74ba3b87153c0ac/autopkgtest-focal/focal/armhf/r/r-cran-sf/20191109_113707_4303b@/log.gz) >> >> Since Debian only runs autopkgtests on amd64, this did not block migration >> of the new version of the package to Debian testing; nevertheless this is a >> serious failure of the package on armhf. I have grabbed a backtrace which >> points to a problem in r-cran-sf itself, not in any of its dependencies: >> >> Program received signal SIGBUS, Bus error. >> 0xf47431cc in wkb_read<double> (wkb=<optimized out>, wkb=<optimized out>) >> at wkb.cpp:201 >> 201 double d = wkb_read<double>(wkb); >> (gdb) bt >> #0 0xf47431cc in wkb_read<double> (wkb=<optimized out>, wkb=<optimized out>) >> at wkb.cpp:201 >> #1 read_numeric_matrix (wkb=wkb@entry=0xfffe7ddc, n_dims=n_dims@entry=2, >> swap=swap@entry=false, cls=..., empty=empty@entry=0x0) at wkb.cpp:201 >> #2 0xf47434b0 in read_matrix_list (wkb=wkb@entry=0xfffe7ddc, >> n_dims=n_dims@entry=2, swap=swap@entry=false, cls=..., >> empty=empty@entry=0xfffe7d27) at >> /usr/include/c++/9/ext/new_allocator.h:89 >> #3 0xf474430c in read_data (wkb=wkb@entry=0xfffe7ddc, EWKB=EWKB@entry=true, >> spatialite=spatialite@entry=false, endian=endian@entry=1, >> addclass=addclass@entry=true, type=type@entry=0xfffe7dd4, >> srid=srid@entry=0xfffe7dd8) >> at /usr/lib/R/site-library/Rcpp/include/Rcpp/vector/generic_proxy.h:37 >> #4 0xf474590a in CPL_read_wkb (wkb_list=..., EWKB=EWKB@entry=true, >> spatialite=spatialite@entry=false) >> at /usr/lib/R/site-library/Rcpp/include/Rcpp/vector/generic_proxy.h:37 >> #5 0xf472d5da in sfc_from_geometry(GEOSContextHandle_HS*, >> std::vector<std::unique_ptr<GEOSGeom_t, std::function<void (GEOSGeom_t*)> >, >> std::allocator<std::unique_ptr<GEOSGeom_t, std::function<void (GEOSGeom_t*)> >> > > >&, int, bool) ( >> hGEOSCtxt=hGEOSCtxt@entry=0x2154c48, >> geom=std::vector of length 1, capacity 1 = {...}, dim=<optimized out>, >> free=free@entry=true) >> at /usr/lib/R/site-library/Rcpp/include/Rcpp/vector/traits.h:65 >> #6 0xf472f542 in CPL_geos_union (sfc=..., by_feature=<optimized out>) >> at geos.cpp:600 >> #7 0xf47100d8 in _sf_CPL_geos_union (sfcSEXP=0x1f0d988, >> by_featureSEXP=0x419568) >> at /usr/lib/R/site-library/Rcpp/include/Rcpp/as.h:151 >> #8 0xf7ce238c in ?? () from /usr/lib/R/lib/libR.so >> Backtrace stopped: previous frame identical to this frame (corrupt stack?) >> (gdb) >> >> -- >> Steve Langasek Give me a lever long enough and a Free OS >> Debian Developer to set it on, and I can move the world. >> Ubuntu Developer https://www.debian.org/ >> slanga...@ubuntu.com vor...@debian.org > > > >> _______________________________________________ >> R-pkg-team mailing list >> r-pkg-t...@alioth-lists.debian.net >> https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/r-pkg-team > > -- Edzer Pebesma Institute for Geoinformatics Heisenbergstrasse 2, 48151 Muenster, Germany Phone: +49 251 8333081
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