Control: tags 872242 + patch
Control: tags 933582 + patch
Control: tags 938078 + patch
Dear maintainer,
I've prepared an NMU for python-pymzml (versioned as 0.7.6-dfsg-5.1). The diff
is attached to this message.
I've uploaded directly to unstable as it fixes 2 RC bugs
Regards.
diff -Nru python-pymzml-0.7.6-dfsg/debian/changelog python-pymzml-0.7.6-dfsg/debian/changelog
--- python-pymzml-0.7.6-dfsg/debian/changelog 2017-09-15 08:05:47.000000000 -0400
+++ python-pymzml-0.7.6-dfsg/debian/changelog 2019-10-07 21:27:22.000000000 -0400
@@ -1,3 +1,15 @@
+python-pymzml (0.7.6-dfsg-5.1) unstable; urgency=medium
+
+ * Non-maintainer upload.
+ * Drop python2 support; Closes: #938078
+ * add latexmk to b-d-i, fix a FTBFS; Closes: #872242
+ * replace b-d-i on texlive-generic-extra with texlive-plain-generic;
+ Closes: #933582
+ * debian/patches/sphinx-pngmath.patch
+ - replace sphinx extension pngmath with imgmath
+
+ -- Sandro Tosi <mo...@debian.org> Mon, 07 Oct 2019 21:27:22 -0400
+
python-pymzml (0.7.6-dfsg-5) unstable; urgency=low
* debian/control: update the dependencies latex-xcolor replaced with
diff -Nru python-pymzml-0.7.6-dfsg/debian/control python-pymzml-0.7.6-dfsg/debian/control
--- python-pymzml-0.7.6-dfsg/debian/control 2017-09-15 08:05:47.000000000 -0400
+++ python-pymzml-0.7.6-dfsg/debian/control 2019-10-07 21:21:46.000000000 -0400
@@ -4,14 +4,13 @@
Section: python
Priority: optional
Build-Depends: dh-python,
- python-all (>= 2.6.6-3~),
- python-setuptools,
python3-all,
python3-setuptools,
debhelper (>=9.20130630),
dpkg-dev (>= 1.16.1~)
Build-Depends-Indep: doxygen (>= 1.8.1.2),
- texlive-generic-extra,
+ latexmk,
+ texlive-plain-generic,
texlive-extra-utils,
texlive-latex-extra,
texlive-latex-recommended,
@@ -26,23 +25,6 @@
Vcs-Git: https://anonscm.debian.org/git/debichem/packages/python-pymzml.git
Vcs-Browser: https://anonscm.debian.org/git/debichem/packages/python-pymzml.git
-Package: python-pymzml
-Architecture: all
-Depends: ${misc:Depends},
- ${python:Depends}
-Suggests: python-pymzml-doc
-Conflicts: python-mzml
-Replaces: python-mzml
-Description: mzML mass spectrometric data parsing (Python 2.x)
- python-pymzml is an extension to Python that offers:
- - easy access to mass spectrometry (MS) data that allows
- the rapid development of tools;
- - a very fast parser for mzML data, the standard in
- mass spectrometry data format;
- - a set of functions to compare or handle spectra.
- .
- This package contains python-pymzml for Python 2.
-
Package: python3-pymzml
Architecture: all
Depends: ${misc:Depends},
diff -Nru python-pymzml-0.7.6-dfsg/debian/patches/series python-pymzml-0.7.6-dfsg/debian/patches/series
--- python-pymzml-0.7.6-dfsg/debian/patches/series 2015-11-25 13:28:46.000000000 -0500
+++ python-pymzml-0.7.6-dfsg/debian/patches/series 2019-10-07 21:25:13.000000000 -0400
@@ -1,2 +1,3 @@
doc-config.patch
remove-shebang-line.patch
+sphinx-pngmath.patch
diff -Nru python-pymzml-0.7.6-dfsg/debian/patches/sphinx-pngmath.patch python-pymzml-0.7.6-dfsg/debian/patches/sphinx-pngmath.patch
--- python-pymzml-0.7.6-dfsg/debian/patches/sphinx-pngmath.patch 1969-12-31 19:00:00.000000000 -0500
+++ python-pymzml-0.7.6-dfsg/debian/patches/sphinx-pngmath.patch 2019-10-07 21:27:05.000000000 -0400
@@ -0,0 +1,11 @@
+--- a/Documentation_src/source/conf.py
++++ b/Documentation_src/source/conf.py
+@@ -30,7 +30,7 @@ sys.path.insert(0, os.path.abspath('.'))
+ extensions = [
+ 'sphinx.ext.autodoc',
+ 'sphinx.ext.todo',
+- 'sphinx.ext.pngmath'#,
++ 'sphinx.ext.imgmath'#,
+ # 'sphinx.ext.napoleon',
+ # 'sphinx.ext.viewcode'
+ ]
diff -Nru python-pymzml-0.7.6-dfsg/debian/python-pymzml.install python-pymzml-0.7.6-dfsg/debian/python-pymzml.install
--- python-pymzml-0.7.6-dfsg/debian/python-pymzml.install 2015-11-24 07:52:13.000000000 -0500
+++ python-pymzml-0.7.6-dfsg/debian/python-pymzml.install 1969-12-31 19:00:00.000000000 -0500
@@ -1,2 +0,0 @@
-README.md usr/share/doc/python-pymzml
-example_scripts usr/share/doc/python-pymzml/
diff -Nru python-pymzml-0.7.6-dfsg/debian/python-pymzml.lintian-overrides python-pymzml-0.7.6-dfsg/debian/python-pymzml.lintian-overrides
--- python-pymzml-0.7.6-dfsg/debian/python-pymzml.lintian-overrides 2015-11-25 15:49:24.000000000 -0500
+++ python-pymzml-0.7.6-dfsg/debian/python-pymzml.lintian-overrides 1969-12-31 19:00:00.000000000 -0500
@@ -1,2 +0,0 @@
-python-pymzml binary: no-upstream-changelog
-python-pymzml binary: package-contains-empty-directory
diff -Nru python-pymzml-0.7.6-dfsg/debian/python-pymzml.manpages python-pymzml-0.7.6-dfsg/debian/python-pymzml.manpages
--- python-pymzml-0.7.6-dfsg/debian/python-pymzml.manpages 2015-11-24 07:03:32.000000000 -0500
+++ python-pymzml-0.7.6-dfsg/debian/python-pymzml.manpages 1969-12-31 19:00:00.000000000 -0500
@@ -1 +0,0 @@
-debian/python-pymzml.7
diff -Nru python-pymzml-0.7.6-dfsg/debian/rules python-pymzml-0.7.6-dfsg/debian/rules
--- python-pymzml-0.7.6-dfsg/debian/rules 2015-11-26 04:32:40.000000000 -0500
+++ python-pymzml-0.7.6-dfsg/debian/rules 2019-10-07 21:20:18.000000000 -0400
@@ -8,7 +8,7 @@
SRCDIR=$(CURDIR)
%:
- dh $@ --with python2,python3 --buildsystem=pybuild
+ dh $@ --with python3 --buildsystem=pybuild
override_dh_compress:
@@ -21,15 +21,12 @@
override_dh_install:
dh_install
# Remove the symbolic link.
- rm -fv debian/python-pymzml/usr/share/doc/python-pymzml/example_scripts/pymzml
rm -fv debian/python3-pymzml/usr/share/doc/python3-pymzml/example_scripts/pymzml
# Remove all the pyc files.
- rm -fv debian/python-pymzml/usr/share/doc/python-pymzml/example_scripts/*.pyc
rm -fv debian/python3-pymzml/usr/share/doc/python3-pymzml/example_scripts/*.pyc
# Remove the license file
- rm -fv debian/python-pymzml/usr/share/doc/python-pymzml/COPYING.txt
rm -fv debian/python3-pymzml/usr/share/doc/python3-pymzml/COPYING.txt
rm -fv debian/python-pymzml-doc/usr/share/doc/python-pymzml-doc/COPYING.txt
