Your message dated Fri, 27 Sep 2019 08:35:27 +0000 with message-id <e1idlip-000h8f...@fasolo.debian.org> and subject line Bug#925779: fixed in mlpack 3.2.0-1 has caused the Debian Bug report #925779, regarding mlpack: ftbfs with GCC-9 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 925779: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=925779 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:mlpack Version: 3.0.4-1 Severity: normal Tags: sid bullseye User: debian-...@lists.debian.org Usertags: ftbfs-gcc-9 Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-9/g++-9, but succeeds to build with gcc-8/g++-8. The severity of this report will be raised before the bullseye release, so nothing has to be done for the buster release. The full build log can be found at: http://people.debian.org/~doko/logs/gcc9-20190321/mlpack_3.0.4-1_unstable_gcc9.log The last lines of the build log are at the end of this report. To build with GCC 9, either set CC=gcc-9 CXX=g++-9 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-9/porting_to.html GCC 9 also passes the linker option --as-needed by default; typical build issues are passing libraries before object files to the linker, or underlinking of convenience libraries built from the same source. [...] make -f src/mlpack/methods/det/CMakeFiles/mlpack_det.dir/build.make src/mlpack/methods/det/CMakeFiles/mlpack_det.dir/build make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 27%] Building CXX object src/mlpack/methods/det/CMakeFiles/mlpack_det.dir/det_main.cpp.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/mlpack/methods/det && /usr/bin/c++ -DARMA_NO_DEBUG -DBOOST_TEST_DYN_LINK -DHAS_OPENMP -DNDEBUG -I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/mlpack/.. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -ftemplate-depth=1000 -O3 -fopenmp -DBINDING_TYPE=BINDING_TYPE_CLI -std=gnu++11 -o CMakeFiles/mlpack_det.dir/det_main.cpp.o -c /<<PKGBUILDDIR>>/src/mlpack/methods/det/det_main.cpp In file included from /<<PKGBUILDDIR>>/src/mlpack/methods/det/dt_utils.hpp:147, from /<<PKGBUILDDIR>>/src/mlpack/methods/det/det_main.cpp:15: /<<PKGBUILDDIR>>/src/mlpack/methods/det/dt_utils_impl.hpp: In function 'mlpack::det::DTree<MatType, TagType>* mlpack::det::Trainer(MatType&, size_t, bool, size_t, size_t, bool) [with MatType = arma::Mat<double>; TagType = int]': /<<PKGBUILDDIR>>/src/mlpack/methods/det/dt_utils_impl.hpp:189:3: error: 'folds' not specified in enclosing 'parallel' 189 | for (omp_size_t fold = 0; fold < (omp_size_t) folds; fold++) | ^~~ /<<PKGBUILDDIR>>/src/mlpack/methods/det/dt_utils_impl.hpp:187:11: error: enclosing 'parallel' 187 | #pragma omp parallel for default(none) \ | ^~~ /<<PKGBUILDDIR>>/src/mlpack/methods/det/dt_utils_impl.hpp:192:33: error: 'testSize' not specified in enclosing 'parallel' 192 | const size_t start = fold * testSize; | ^~~~~~~~ /<<PKGBUILDDIR>>/src/mlpack/methods/det/dt_utils_impl.hpp:187:11: error: enclosing 'parallel' 187 | #pragma omp parallel for default(none) \ | ^~~ /<<PKGBUILDDIR>>/src/mlpack/methods/det/dt_utils_impl.hpp:194:61: error: 'cvData' not specified in enclosing 'parallel' 194 | * testSize, (size_t) cvData.n_cols); | ~~~~~~~^~~~~~ /<<PKGBUILDDIR>>/src/mlpack/methods/det/dt_utils_impl.hpp:187:11: error: enclosing 'parallel' 187 | #pragma omp parallel for default(none) \ | ^~~ /<<PKGBUILDDIR>>/src/mlpack/methods/det/dt_utils_impl.hpp:222:5: error: 'minLeafSize' not specified in enclosing 'parallel' 222 | cvDTree.Grow(train, cvOldFromNew, useVolumeReg, maxLeafSize, | ^~~~~~~ /<<PKGBUILDDIR>>/src/mlpack/methods/det/dt_utils_impl.hpp:187:11: error: enclosing 'parallel' 187 | #pragma omp parallel for default(none) \ | ^~~ /<<PKGBUILDDIR>>/src/mlpack/methods/det/dt_utils_impl.hpp:222:5: error: 'maxLeafSize' not specified in enclosing 'parallel' 222 | cvDTree.Grow(train, cvOldFromNew, useVolumeReg, maxLeafSize, | ^~~~~~~ /<<PKGBUILDDIR>>/src/mlpack/methods/det/dt_utils_impl.hpp:187:11: error: enclosing 'parallel' 187 | #pragma omp parallel for default(none) \ | ^~~ /<<PKGBUILDDIR>>/src/mlpack/methods/det/dt_utils_impl.hpp:222:5: error: 'useVolumeReg' not specified in enclosing 'parallel' 222 | cvDTree.Grow(train, cvOldFromNew, useVolumeReg, maxLeafSize, | ^~~~~~~ /<<PKGBUILDDIR>>/src/mlpack/methods/det/dt_utils_impl.hpp:187:11: error: enclosing 'parallel' 187 | #pragma omp parallel for default(none) \ | ^~~ make[4]: *** [src/mlpack/methods/det/CMakeFiles/mlpack_det.dir/build.make:66: src/mlpack/methods/det/CMakeFiles/mlpack_det.dir/det_main.cpp.o] Error 1 make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:2300: src/mlpack/methods/det/CMakeFiles/mlpack_det.dir/all] Error 2 make[3]: *** Waiting for unfinished jobs.... [ 27%] Linking CXX executable ../../../../bin/mlpack_decision_stump cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/mlpack/methods/decision_stump && /usr/bin/cmake -E cmake_link_script CMakeFiles/mlpack_decision_stump.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -ftemplate-depth=1000 -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/mlpack_decision_stump.dir/decision_stump_main.cpp.o -o ../../../../bin/mlpack_decision_stump -Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/lib: ../../../../lib/libmlpack.so.3.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so /usr/lib/x86_64-linux-gnu/libboost_serialization.so -lpthread /usr/lib/libarmadillo.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so /usr/lib/x86_64-linux-gnu/libboost_serialization.so make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 27%] Built target mlpack_decision_stump [ 28%] Linking CXX executable ../../../../bin/mlpack_decision_tree cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/mlpack/methods/decision_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/mlpack_decision_tree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -ftemplate-depth=1000 -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/mlpack_decision_tree.dir/decision_tree_main.cpp.o -o ../../../../bin/mlpack_decision_tree -Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/lib: ../../../../lib/libmlpack.so.3.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so /usr/lib/x86_64-linux-gnu/libboost_serialization.so -lpthread /usr/lib/libarmadillo.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so /usr/lib/x86_64-linux-gnu/libboost_serialization.so make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 28%] Built target mlpack_decision_tree [ 28%] Linking CXX executable ../../../../bin/mlpack_dbscan cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/mlpack/methods/dbscan && /usr/bin/cmake -E cmake_link_script CMakeFiles/mlpack_dbscan.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -ftemplate-depth=1000 -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/mlpack_dbscan.dir/dbscan_main.cpp.o -o ../../../../bin/mlpack_dbscan -Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/lib: ../../../../lib/libmlpack.so.3.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so /usr/lib/x86_64-linux-gnu/libboost_serialization.so -lpthread /usr/lib/libarmadillo.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so /usr/lib/x86_64-linux-gnu/libboost_serialization.so make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 28%] Built target mlpack_dbscan make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: *** [Makefile:144: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' dh_auto_build: cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" returned exit code 2 make[1]: *** [debian/rules:56: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:44: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
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--- Begin Message ---Source: mlpack Source-Version: 3.2.0-1 We believe that the bug you reported is fixed in the latest version of mlpack, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 925...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Barak A. Pearlmutter <b...@debian.org> (supplier of updated mlpack package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Fri, 27 Sep 2019 08:49:04 +0100 Source: mlpack Architecture: source Version: 3.2.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <debian-science-maintain...@lists.alioth.debian.org> Changed-By: Barak A. Pearlmutter <b...@debian.org> Closes: 925779 Changes: mlpack (3.2.0-1) unstable; urgency=medium . * new upstream version - builds on GCC 9.x (closes: #925779) * bump policy * patch spelling error Checksums-Sha1: 816448b3f76dde014e294a27b112d730c3f754ab 2336 mlpack_3.2.0-1.dsc d948e53adb0ab261ee322c927320abb9e0c20244 2489636 mlpack_3.2.0.orig.tar.xz e1b46385f2a04334d0a85aa17891b8fae9e34be1 10592 mlpack_3.2.0-1.debian.tar.xz 3105651b24ecf9b0412891577d0e25f414513d76 11757 mlpack_3.2.0-1_source.buildinfo Checksums-Sha256: 041f931fdfbd674cd7dd7299524cd95943d93765aa7728bd7f4c5aab972e9d42 2336 mlpack_3.2.0-1.dsc d336cdde888f9296e9443b95978a378f7031433fdad1276ba857ef5c1d961d33 2489636 mlpack_3.2.0.orig.tar.xz 297a531c9d9862c789a3d0085c54fbc374666a69f981e03a54bf69a6aeb1a0e5 10592 mlpack_3.2.0-1.debian.tar.xz 2a017fc1d3583d5a0e6b287d744ce8ae83046d33ce1a0fe20b8ecbf1a908746a 11757 mlpack_3.2.0-1_source.buildinfo Files: fb91d394343886aa10b5411e0a9e9c2b 2336 libs optional mlpack_3.2.0-1.dsc f8b9badcfcbe6416ae70d6242da3180a 2489636 libs optional mlpack_3.2.0.orig.tar.xz 3ad146490f18e1400854cb5151dd9645 10592 libs optional mlpack_3.2.0-1.debian.tar.xz 697afd0a4b6c0eeacfe49fc800cd2274 11757 libs optional mlpack_3.2.0-1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJDBAEBCgAtFiEEZPQp426hHMLZZlRvEltXR14ZDRgFAl2Nw4IPHGJhcEBkZWJp YW4ub3JnAAoJEBJbV0deGQ0YTpcQAM9UJqjk0vEMs8HtUZvpignqu0zZIz09NxZh PFqp33bUinCI+fTywlHUaDmKxk79hfI5wSpWS2IH43F5I3ePvnVKhf/KdhJQn6CX hyc+T2i7NqGNy9Qyq08m2Qfip+CKxhTXXTp7xLqz6CjaiGYPZKN3lF20a49Q0NLf MMY9j8K5/ANDJ7iJ+Je4mPndrs6UHm8HFFcl/kYGX9idrKu4ognGEw/EswzRHQvk lU22ydmFRcd4Kl9w+W6zymbXaRldmMoyi8Viatq6l2K9JJFlWgCOcdnI4vbo6ml9 /7/6sOXvPb0IeQmUET1dY8xvzup39EN1Bd7ml3/reW+lCNU1CH2ZxqZw+4ULTEbs VrUbra3UghXldiGiMwxHZOnr84a6QKqUgM58+ivtHqV0w5URS76diK7iayIvzkQc pxXxGWVaIW0B5HU8+ZWilPRTenCG7hGdWYg6X4+1TtN00VrfVproDNWFkAE5gkIJ WLjFHij6xz6aRHXmSK5QRffK45kiHehtdaSE8wYgdfRTKP9IOAHdDYuFerBcJuM1 dZMBlRY+6VGczHs3r908oGWkia3gQgByptwCzXwynunCgXv3SLC98mpJ5JsC+EBb DbIHoVbnq92fOQ0Lapk2pUm3pl1zpVsZEi3IdC5jt0xhUD/uErwBvOThNBc6xkhn JlzshUMD =0viA -----END PGP SIGNATURE-----
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