Your message dated Mon, 16 Sep 2019 11:53:05 +0000 with message-id <e1i9pz3-000dk1...@fasolo.debian.org> and subject line Bug#940280: fixed in spoa 3.0.1-1 has caused the Debian Bug report #940280, regarding spoa: ftbfs with GCC-9 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 940280: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=940280 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:spoa Version: 1.1.5-1 Severity: normal Tags: sid bullseye User: debian-...@lists.debian.org Usertags: ftbfs-gcc-9 Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-9/g++-9, but succeeds to build with gcc-8/g++-8. The severity of this report will be raised before the bullseye release, so nothing has to be done for the buster release. The full build log can be found at: http://people.debian.org/~doko/logs/gcc9-20190321/spoa_1.1.5-1_unstable_gcc9.log The last lines of the build log are at the end of this report. To build with GCC 9, either set CC=gcc-9 CXX=g++-9 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-9/porting_to.html GCC 9 also passes the linker option --as-needed by default; typical build issues are passing libraries before object files to the linker, or underlinking of convenience libraries built from the same source. [...] Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so.1.1.5 -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa_static.a -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/spoa.hpp -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/graph.hpp -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/alignment_engine.hpp -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/spoa-1.pc -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/bin/spoa -- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/bin/spoa" to "" make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_install file-rename 's/_static\.a/.a/' `find debian -name libspoa_static.a` d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/pkgconfig usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libspoa-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libspoa1.1.5/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.a debian/libspoa-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so debian/libspoa-dev/usr/lib/x86_64-linux-gnu mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so.1.1.5 debian/libspoa1.1.5/usr/lib/x86_64-linux-gnu PKGDEV=libspoa-dev PKGSHL=libspoa1.1.5 install -d -m 755 debian/libspoa-dev/usr/include mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include install -d -m 755 debian/libspoa-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig debian/libspoa-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libspoa1.1.5/DEBIAN/symbols doesn't match completely debian/libspoa1.1.5.symbols --- debian/libspoa1.1.5.symbols (libspoa1.1.5_1.1.5-1_amd64) +++ dpkg-gensymbolsrelMRH 2019-03-26 16:55:47.191259354 +0000 @@ -63,7 +63,8 @@ _ZNK4spoa5Graph8subgraphEjjRSt6vectorIiSaIiEE@Base 1.1.3 _ZNK4spoa5Graph9print_dotERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.5 _ZNKSt5ctypeIcE8do_widenEc@Base 1.1.5 - _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEEm@Base 1.1.3 +#MISSING: 1.1.5-1# _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEEm@Base 1.1.3 + _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE9_M_rehashEmRKm@Base 1.1.5-1 _ZNSt11_Deque_baseIjSaIjEE17_M_initialize_mapEm@Base 1.1.3 _ZNSt11_Deque_baseIjSaIjEED1Ev@Base 1.1.3 _ZNSt11_Deque_baseIjSaIjEED2Ev@Base 1.1.3 dh_makeshlibs: failing due to earlier errors make: *** [debian/rules:12: binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2
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--- Begin Message ---Source: spoa Source-Version: 3.0.1-1 We believe that the bug you reported is fixed in the latest version of spoa, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 940...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated spoa package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 16 Sep 2019 13:24:48 +0200 Source: spoa Binary: spoa libspoa3 libspoa-dev Architecture: source Version: 3.0.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libspoa-dev - SIMD partial order alignment library (development files) libspoa3 - SIMD partial order alignment library spoa - SIMD partial order alignment tool Closes: 925835 940280 Changes: spoa (3.0.1-1) unstable; urgency=medium . * Fix symbols file Closes: #925835, #940280 * New upstream version * debhelper-compat 12 Checksums-Sha1: d1ca360a3c2b0d2316fc7428a2bdbf9f0bc74491 2098 spoa_3.0.1-1.dsc 5ebad50e84f860dce8d710506753d64e115699f6 41146 spoa_3.0.1.orig.tar.gz 6ed919ba92bf74e6c194634526633995152503b7 5800 spoa_3.0.1-1.debian.tar.xz Checksums-Sha256: 990c90c1afcba469c16a311003ec2cb0384064ab92d7e113d7a20eac7fcacda7 2098 spoa_3.0.1-1.dsc a27678ea3e5701b63ba0b0b75c7151910b48ef50ff55a97ebd57bb57f4c0f14a 41146 spoa_3.0.1.orig.tar.gz dc1b90fda662edd50b3a435751f67bd513b66e7860dc16b125e451e09baddc7b 5800 spoa_3.0.1-1.debian.tar.xz Files: 42ccc96abd26022722bfbaceec45eae2 2098 science optional spoa_3.0.1-1.dsc 61d4f2ba90719d44b4f34464d1d227da 41146 science optional spoa_3.0.1.orig.tar.gz fc83b876e9562f015edd574e8f7ae4bb 5800 science optional spoa_3.0.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl1/ck0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG7xhAAleql7KPy5wEM90EpUWBMZEEnxpyCo2no bICCVDv9jFCw03OLo/wIksVkmNaMNi5gGGap4ZyhSyG3ZdLJ/UqaWuiiZpD4gZyc dIULOeNQStNhyBQ6XYYRGBY4NArrCq2woUlyv+AID/geixMStVee8T2KDumcKtAs WZQJ8E6wNQiZMf7O9rxnZW4Z0YmqxH70XwbiJMYWpsIZ/chpitrqoyOQC6VrOGFf QQjV8TjSVA7AzDzSHA7402WEqoENpMNc7LzjyGjso9gq2z+ovT0BpcibVcjKM6av UgFlXsQ0MjI/3WdINcMdDkFxsEajlZXwW7awO6EK8r8IwXTLHbluod+HNZaoHDqz uNaxIFvceJBtfRme2ks4bkwX+KbKd0EMceQeBxQj0/83ddLqDWu1Lkup5Htp3uQx 0jJkgQoLRyzId4BgvBzseUojCYg7JOBms9SrmHbLZ5aF9cSxBjB4/T8kMEMdfYx9 WCiUOmtE55WzAq7YN+5AWcHX5PCvHHdUPGYXAo5+x3zh6T8sSqxlcroohj/axgRB 392gYRTj40IILoKEtXQz19iruE/5wHuZvKc8fHmSsBUAxOy0KFjwNIX0HEtBPzVb 5iIpBOI+3nEQFC1vdynKsQt5XPpERKGr6sInZ2pfisK5FFTdHwLMhx6pTUFAOHy9 Wg6XqWOFfrw= =LuUF -----END PGP SIGNATURE-----
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