Your message dated Tue, 20 Aug 2019 17:20:01 +0000 with message-id <e1i07nd-000amj...@fasolo.debian.org> and subject line Bug#934600: fixed in cufflinks 2.2.1+dfsg.1-4 has caused the Debian Bug report #934600, regarding cufflinks,gffread: both ship /usr/bin/gffread to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 934600: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=934600 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: cufflinks,gffread Severity: serious User: trei...@debian.org Usertags: edos-file-overwrite Control: found -1 2.2.1+dfsg.1-3 Control: found -1 0.11.4-1 Hi, automatic installation tests of packages that share a file and at the same time do not conflict by their package dependency relationships has detected the following problem: Preparing to unpack .../gffread_0.11.4-1_amd64.deb ... Unpacking gffread (0.11.4-1) ... dpkg: error processing archive /var/cache/apt/archives/gffread_0.11.4-1_amd64.deb (--unpack): trying to overwrite '/usr/bin/gffread', which is also in package cufflinks 2.2.1+dfsg.1-3+b1 Errors were encountered while processing: /var/cache/apt/archives/gffread_0.11.4-1_amd64.deb This is a serious bug as it makes installation fail, and violates sections 7.6.1 and 10.1 of the policy. An optimal solution would consist in only one of the packages installing that file, and renaming or removing the file in the other package. Depending on the circumstances you might also consider Replace relations or file diversions. If the conflicting situation cannot be resolved then, as a last resort, the two packages have to declare a mutual Conflict. Please take into account that Replaces, Conflicts and diversions should only be used when packages provide different implementations for the same functionality. Here is a list of files that are known to be shared by both packages (according to the Contents file for sid/amd64, which may be slightly out of sync): usr/bin/gffread usr/share/man/man1/gffread.1.gz This bug is assigned to both packages. If you, the maintainers of the two packages in question, have agreed on which of the packages will resolve the problem please reassign the bug to that package. You may also register in the BTS that the other package is affected by the bug. Cheers, Andreas PS: for more information about the detection of file overwrite errors of this kind see https://qa.debian.org/dose/file-overwrites.html
cufflinks=2.2.1+dfsg.1-3+b1_gffread=0.11.4-1.log.gz
Description: application/gzip
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--- Begin Message ---Source: cufflinks Source-Version: 2.2.1+dfsg.1-4 We believe that the bug you reported is fixed in the latest version of cufflinks, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 934...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Alexandre Mestiashvili <mes...@debian.org> (supplier of updated cufflinks package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 20 Aug 2019 17:51:28 +0200 Source: cufflinks Architecture: source Version: 2.2.1+dfsg.1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Alexandre Mestiashvili <mes...@debian.org> Closes: 934600 Changes: cufflinks (2.2.1+dfsg.1-4) unstable; urgency=medium . [ Valentin Marcon ] * Correct DOI . [ Alexandre Mestiashvili ] * Drop gffread binary, add gffread package to Recommends in d/control Closes: #934600 * Switch to debhelper-compat, bump Policy to 4.4.0, update Uploader's email address * Add README.Debian, explaining why gffread is removed from cufflinks Checksums-Sha1: 93c7df94a08aab472004c37ace2e8ad16587434d 2239 cufflinks_2.2.1+dfsg.1-4.dsc 66a24d713e68883440cbbd8404670cf304780af2 11308 cufflinks_2.2.1+dfsg.1-4.debian.tar.xz 2c54db4183f4ef0f912fa3adeb5cbb06da95688f 7192 cufflinks_2.2.1+dfsg.1-4_amd64.buildinfo Checksums-Sha256: 1a156037216dea20ef063ce4bd94599f25ec3a9ee039b4ed1b98fd8f08555721 2239 cufflinks_2.2.1+dfsg.1-4.dsc d88eb1ea8d14c57f711f73959d8f048138c22eb96b8493b17b11d97c1a85b0d3 11308 cufflinks_2.2.1+dfsg.1-4.debian.tar.xz 9d8f3e95f29034eefaf91a83f9750c7d212906cc156df1a71db915af54061fb9 7192 cufflinks_2.2.1+dfsg.1-4_amd64.buildinfo Files: 3cccecad013535de17dd0fa7c8e99a33 2239 non-free/science optional cufflinks_2.2.1+dfsg.1-4.dsc 9335288423a0473e26c909b3e069de1e 11308 non-free/science optional cufflinks_2.2.1+dfsg.1-4.debian.tar.xz 677a182794f4b23b29dc79ddf5ac8cdb 7192 non-free/science optional cufflinks_2.2.1+dfsg.1-4_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEsaUesned0BdDzBm6HPeSERtSKLAFAl1cKLQSHG1lc3RpYUBk ZWJpYW4ub3JnAAoJEBz3khEbUiiw6+EQAK7bCDaCV+o8rLCcqdYya7PeAdGBRmfp c9/xiMUakYgCivi1J/wFikR9ns4dyQ9bQgL3uLaGi5PjjhMCzNhRWrIv0fTbmqdT SyJnNXfhot/oCiVrTwTZNKmWEtsSoVGK0k7odHu5+qXh6EKgcGVhJeFeqXVQzmiL eO61vxXtDrbX04C/duFN2gw8UIOlbW31wu45DKU35JTqPIEt9a1O2RvJvBt3s8Ec nm0zMTRGzyzGHuGlIKO0pBH0VyBi2lipCsSArWHfBOqZN+1s83L80xOCh/QCLrJK II2AuUa3OCbzXVsFwy9G3y3zGV3mTqCuyFxmqXsMLb5ITv/ARjXUt5rDtvABnFOQ s3v0E06XOb2tFnfTot6h/BEYWl6QqVj2kbYuBvIZkxW0PU29Tt1LaTuUaHG0wOsG 8yqhZUItVSGMhaEt0vBav3GA8fbxPxoyjtBPsflGHuavDpkxa0EejIEvcLE5KJKH 6NuWKhBLt6GHfYD0OuOlQqv9b2UwKwP8zig/Ggz0IGZZgrn5A83tL24e2tcvGxhu Utp50wYQFnFHT5F514hZ8xr6iVTShgjhTM4o49pkdoZg7Od+sGFuuMpAS6PXlL8s +96G2SezfY+c9r2MkB4oJHy0/qP8n4h9tJrNWRrhHQIJScGHy3txWlsAN1r9YjGO s+A+dyb0nYhf =4+/2 -----END PGP SIGNATURE-----
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