On Tue, 9 Jul 2019 at 16:56, Andreas Tille <andr...@an3as.eu> wrote: > > Hi Carnė, > > On Tue, Jul 09, 2019 at 04:53:31PM +0100, Carnė Draug wrote: > > On Tue, 9 Jul 2019 at 10:33, Andreas Tille <andr...@fam-tille.de> wrote: > > > > > > https://tests.reproducible-builds.org/debian/rbuild/unstable/amd64/gbrowse_2.56+dfsg-4.rbuild.log.gz > > > > I have checked the output from that link and it's getting a lot of > > "Can't locate Bio/DB/SeqFeature/Store.pm in @INC (you may need to > > install the Bio::DB::SeqFeature::Store module)" and another for > > Bio::DB::GFF. > > > > These module used to be part of the BioPerl distribution but has been > > moved out to their own distribution, both of which have already been > > released. > > > > Their distributions are: > > > > Bio-DB-SeqFeature [1,2] > > Bio-DB-GFF [3,4] > > > > [1] https://github.com/bioperl/Bio-DB-SeqFeature/ > > [2] https://metacpan.org/release/Bio-DB-SeqFeature > > [3] https://github.com/bioperl/Bio-DB-GFF/ > > [4] https://metacpan.org/release/Bio-DB-GFF > > Thanks for analysing this issue. Do you volunteer to create these > packages?
Hi Andreas I'm sorry but I won't be able to take over those packages. I don't expect there to be anything specially tricky about them though, they're pretty standard perl distributions. Both of them have both perl 5 modules and programs which might need to split into two debian packages. Here's some notes from my side (I helped preparing the bioperl releases): * Bio-DB-SeqFeature is depependent on Bio-DB-GFF (I have this on my personal notes but I'm looking at the code now and I think this is incorrect). * Bio-DB-GFF is dependent on Bio-DB-BioFetch. Bio-DB-BioFetch is also not packaged in Debian. Let me know if there's issues I may be able to help with.
