Source: cnvkit Version: 0.9.5-2 Severity: serious Tags: buster sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20190325 qa-ftbfs Justification: FTBFS in buster on amd64
Hi, During a rebuild of all packages in buster (in a buster chroot, not a sid chroot), your package failed to build on amd64. Relevant part (hopefully): > make[2]: Entering directory '/<<PKGBUILDDIR>>/test' > python3 ../cnvkit.py import-picard picard/p2-5_5.targetcoverage.csv > picard/p2-5_5.antitargetcoverage.csv picard/p2-9_5.targetcoverage.csv > picard/p2-9_5.antitargetcoverage.csv picard/p2-20_5.targetcoverage.csv > picard/p2-20_5.antitargetcoverage.csv -d build/ > python3 ../cnvkit.py import-picard picard/p2-5_5.targetcoverage.csv -d build/ > python3 ../cnvkit.py import-picard picard/p2-5_5.antitargetcoverage.csv -d > build/ > python3 ../cnvkit.py import-picard picard/p2-9_2.targetcoverage.csv -d build/ > WARNING: Ambiguous gene name 'TERT|TERT Promoter'; using 'TERT Promoter' > WARNING: Ambiguous gene name 'TERT|TERT Promoter'; using 'TERT Promoter' > WARNING: Ambiguous gene name 'TERT|TERT Promoter'; using 'TERT Promoter' > Created directory build/ > Traceback (most recent call last): > File "../cnvkit.py", line 13, in <module> > args.func(args) > File "/<<PKGBUILDDIR>>/cnvlib/commands.py", line 1368, in _cmd_import_picard > os.mkdir(args.output_dir) > FileExistsError: [Errno 17] File exists: 'build/' > Wrote build/p2-5_5.targetcoverage.cnn with 6646 regions > Wrote build/p2-9_2.targetcoverage.cnn with 6646 regions > make[2]: *** [Makefile:58: build/p2-5_5.targetcoverage.cnn] Error 1 The full build log is available from: http://qa-logs.debian.net/2019/03/25/cnvkit_0.9.5-2_testing.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
