Your message dated Sat, 16 Mar 2019 18:34:35 +0000
with message-id <e1h5e8h-00044y...@fasolo.debian.org>
and subject line Bug#924734: fixed in libbpp-seq-omics 2.4.1-3
has caused the Debian Bug report #924734,
regarding libbpp-seq-omics: FTBFS (dh_makeshlibs fails)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
924734: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=924734
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:libbpp-seq-omics
Version: 2.4.1-2
Severity: serious
Tags: ftbfs
Dear maintainer:
I tried to build this package in buster but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc
-DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
"-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON
-DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ..
-- The CXX compiler identification is GNU 8.3.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- bpp-core 4.1.0 found:
[... snipped ...]
_ZTv0_n24_N3bpp13BasicSequenceD0Ev@Base 2.4.1
@@ -1134,7 +1150,9 @@
_ZTv0_n48_N3bpp25SimpleMafStatisticsResult8setValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi@Base
2.4.1
_ZTv0_n48_N3bpp36CsvStatisticsOutputIterationListener14iterationStopsEv@Base
2.4.1
_ZTv0_n48_NK3bpp12EdSymbolList11getAlphabetEv@Base 2.4.1
+ _ZTv0_n48_NK3bpp12SequenceMask11isRemovableEv@Base 2.4.1-2
_ZTv0_n48_NK3bpp15SequenceQuality11isRemovableEv@Base 2.4.1
+ _ZTv0_n48_NK3bpp20AbstractCoreSequence7getNameB5cxx11Ev@Base 2.4.1-2
_ZTv0_n48_NK3bpp21AbstractMafStatistics9getResultEv@Base 2.4.1
_ZTv0_n48_NK3bpp22SequenceWithAnnotation7getNameB5cxx11Ev@Base 2.4.1
_ZTv0_n48_NK3bpp25AbstractSequenceContainer11getAlphabetEv@Base 2.4.1
@@ -1144,6 +1162,7 @@
_ZTv0_n56_N3bpp16GtfFeatureReader17getFeaturesOfTypeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERNS_18SequenceFeatureSetE@Base
2.4.1
_ZTv0_n56_N3bpp17SiteMafStatistics7computeERKNS_8MafBlockE@Base 2.4.1
_ZTv0_n56_N3bpp19AbstractMafIterator20addIterationListenerEPNS_17IterationListenerE@Base
2.4.1
+
_ZTv0_n56_N3bpp20AbstractCoreSequence7setNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1-2
_ZTv0_n56_N3bpp21BedGraphFeatureReader17getFeaturesOfTypeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERNS_18SequenceFeatureSetE@Base
2.4.1
_ZTv0_n56_N3bpp22SequenceWithAnnotation7setNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
_ZTv0_n56_N3bpp25PolymorphismMafStatistics7computeERKNS_8MafBlockE@Base 2.4.1
@@ -1153,6 +1172,7 @@
_ZTv0_n56_N3bpp34SiteFrequencySpectrumMafStatistics7computeERKNS_8MafBlockE@Base
2.4.1
_ZTv0_n56_N3bpp37FourSpeciesPatternCountsMafStatistics7computeERKNS_8MafBlockE@Base
2.4.1
_ZTv0_n56_NK3bpp12EdSymbolList4sizeEv@Base 2.4.1
+ _ZTv0_n56_NK3bpp12SequenceMask8isSharedEv@Base 2.4.1-2
_ZTv0_n56_NK3bpp15BasicSymbolList4sizeEv@Base 2.4.1
_ZTv0_n56_NK3bpp15SequenceQuality8isSharedEv@Base 2.4.1
_ZTv0_n64_N3bpp16GffFeatureReader21getFeaturesOfSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERNS_18SequenceFeatureSetE@Base
2.4.1
@@ -1160,12 +1180,14 @@
_ZTv0_n64_N3bpp21BedGraphFeatureReader21getFeaturesOfSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERNS_18SequenceFeatureSetE@Base
2.4.1
_ZTv0_n64_N3bpp22SequenceWithAnnotation10setContentERKSt6vectorIiSaIiEE@Base
2.4.1
_ZTv0_n64_NK3bpp17SiteMafStatistics16getSupportedTagsB5cxx11Ev@Base 2.4.1
+ _ZTv0_n64_NK3bpp20AbstractCoreSequence11getCommentsB5cxx11Ev@Base 2.4.1-2
_ZTv0_n64_NK3bpp22SequenceWithAnnotation11getCommentsB5cxx11Ev@Base 2.4.1
_ZTv0_n64_NK3bpp25PolymorphismMafStatistics16getSupportedTagsB5cxx11Ev@Base
2.4.1
_ZTv0_n64_NK3bpp28CharacterCountsMafStatistics16getSupportedTagsB5cxx11Ev@Base
2.4.1
_ZTv0_n64_NK3bpp30SequenceDiversityMafStatistics16getSupportedTagsB5cxx11Ev@Base
2.4.1
_ZTv0_n64_NK3bpp34SiteFrequencySpectrumMafStatistics16getSupportedTagsB5cxx11Ev@Base
2.4.1
_ZTv0_n64_NK3bpp37FourSpeciesPatternCountsMafStatistics16getSupportedTagsB5cxx11Ev@Base
2.4.1
+
_ZTv0_n72_N3bpp20AbstractCoreSequence11setCommentsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EE@Base
2.4.1-2
_ZTv0_n72_N3bpp22SequenceWithAnnotation10setContentERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EE@Base
2.4.1
_ZTv0_n72_N3bpp22SequenceWithAnnotation11setCommentsERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EE@Base
2.4.1
_ZTv0_n72_NK3bpp5Fastq12nextSequenceERSiRNS_8SequenceE@Base 2.4.1
dh_makeshlibs: failing due to earlier errors
make: *** [debian/rules:10: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned
exit status 2
--------------------------------------------------------------------------------
(The above is just how the build ends and not necessarily the most relevant
part)
The build was made in my autobuilder with "dpkg-buildpackage -B"
and it also fails here:
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libbpp-seq-omics.html
where you can get a full build log if you need it.
If this is really a bug in one of the build-depends, please use reassign and
affects,
so that this is still visible in the BTS web page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: libbpp-seq-omics
Source-Version: 2.4.1-3
We believe that the bug you reported is fixed in the latest version of
libbpp-seq-omics, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 924...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated libbpp-seq-omics package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 16 Mar 2019 19:07:21 +0100
Source: libbpp-seq-omics
Binary: libbpp-seq-omics-dev libbpp-seq-omics3
Architecture: source
Version: 2.4.1-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
libbpp-seq-omics-dev - Bio++ Sequence library: genomics components
(development files)
libbpp-seq-omics3 - Bio++ Sequence library: genomics components
Closes: 924734
Changes:
libbpp-seq-omics (2.4.1-3) unstable; urgency=medium
.
* Rebuild for new version of gcc to fix symbols
Closes: #924734
Checksums-Sha1:
eb5efbb66a56152d37b7497c38739a0b2e6e8524 2216 libbpp-seq-omics_2.4.1-3.dsc
da2229225c5c245e3dc771dfb8f458c091ff35fd 17080
libbpp-seq-omics_2.4.1-3.debian.tar.xz
Checksums-Sha256:
930053594a26a488ce8014549f16d95f64e5b67202a532ad3e613a167f022a4f 2216
libbpp-seq-omics_2.4.1-3.dsc
959b5526f7a55e5b1b8622b29c10b1fce34ad0914f8bf18d9c513a7048546ee6 17080
libbpp-seq-omics_2.4.1-3.debian.tar.xz
Files:
ae194fdd7bf78df105abd02ffb66a4c8 2216 science optional
libbpp-seq-omics_2.4.1-3.dsc
c329ca192173f4c44d7d7d4c6dbc9069 17080 science optional
libbpp-seq-omics_2.4.1-3.debian.tar.xz
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--- End Message ---
