Package: src:elki
Version: 0.7.1-10
Severity: serious
Tags: ftbfs patch
Dear maintainer:
I tried to build this package in buster but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-indep
dh build-indep --buildsystem=maven
dh_update_autotools_config -i -O--buildsystem=maven
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# Remove unneded executable bits:
find elki addons data -type f -executable -exec chmod -x {} \+
dh_auto_configure -O--buildsystem=maven
mh_patchpoms -pelki --debian-build --keep-pom-version
--maven-repo=/<<PKGBUILDDIR>>/debian/maven-repo
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -i -O--buildsystem=maven
/usr/lib/jvm/java-11-openjdk-amd64/bin/java -noverify -cp
/usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven
-Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>>
-Dclassworlds.conf=/etc/maven/m2-debian.conf
-Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties
org.codehaus.plexus.classworlds.launcher.Launcher
-s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian
-Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package
-DskipTests -Dnotimestamp=true -Dlocale=en_US
WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by
com.google.inject.internal.cglib.core.$ReflectUtils$1
(file:/usr/share/maven/lib/guice.jar) to method
java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain)
WARNING: Please consider reporting this to the maintainers of
com.google.inject.internal.cglib.core.$ReflectUtils$1
WARNING: Use --illegal-access=warn to enable warnings of further illegal
reflective access operations
WARNING: All illegal access operations will be denied in a future release
[INFO] Scanning for projects...
[WARNING]
[WARNING] Some problems were encountered while building the effective model for
de.lmu.ifi.dbs.elki:elki-libsvm:jar:0.7.1
[WARNING] 'dependencies.dependency.systemPath' for tw.edu.ntu.csie:libsvm:jar
should use a variable instead of a hard-coded path /usr/share/java/libsvm3.jar
@ line 73, column 16
[WARNING]
[WARNING] It is highly recommended to fix these problems because they threaten
the stability of your build.
[WARNING]
[WARNING] For this reason, future Maven versions might no longer support
building such malformed projects.
[WARNING]
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[INFO] ELKI Data Mining Framework - Parent Project [pom]
[INFO] ELKI Data Mining Framework [jar]
[INFO] ELKI Data Mining Framework - Batik Visualization [jar]
[INFO] ELKI Data Mining Framework - Tutorial Algorithms [jar]
[INFO] ELKI Data Mining Framework - LibSVM based extensions [jar]
[INFO]
[INFO] ------------------< de.lmu.ifi.dbs.elki:elki-project >------------------
[INFO] Building ELKI Data Mining Framework - Parent Project 0.7.1 [1/5]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO]
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @
elki-project ---
[INFO]
[INFO] --- maven-javadoc-plugin:3.0.1:jar (attach-javadocs) @ elki-project ---
[INFO] Not executing Javadoc as the project is not a Java classpath-capable
package
[INFO]
[INFO] ----------------------< de.lmu.ifi.dbs.elki:elki >----------------------
[INFO] Building ELKI Data Mining Framework 0.7.1 [2/5]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ elki ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] Copying 118 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ elki ---
[INFO] Compiling 1876 source files to /<<PKGBUILDDIR>>/elki/target/classes
[WARNING] bootstrap class path not set in conjunction with -source 7
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/gui/minigui/MiniGUI.java:[27,16]
java.awt.Event in java.awt has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/database/ids/DBID.java:[50,7]
hashCode() in de.lmu.ifi.dbs.elki.database.ids.DBIDRef has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/utilities/optionhandling/parameterization/AbstractParameterization.java:[159,15]
finalize() in java.lang.Object has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/utilities/optionhandling/parameterization/AbstractParameterization.java:[161,10]
finalize() in java.lang.Object has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/AbstractDirectoryEntry.java:[36,17]
serializable class de.lmu.ifi.dbs.elki.index.tree.AbstractDirectoryEntry has
no definition of serialVersionUID
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/AbstractNode.java:[49,17]
serializable class de.lmu.ifi.dbs.elki.index.tree.AbstractNode has no
definition of serialVersionUID
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/spatial/rstarvariants/AbstractRStarTreeNode.java:[50,17]
serializable class
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.AbstractRStarTreeNode has
no definition of serialVersionUID
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/IndexTreePath.java:[38,8]
Class de.lmu.ifi.dbs.elki.index.tree.IndexTreePath overrides equals, but
neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/AbstractLeafEntry.java:[39,17]
serializable class de.lmu.ifi.dbs.elki.index.tree.AbstractLeafEntry has no
definition of serialVersionUID
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/correlation/AbsolutePearsonCorrelationDistanceFunction.java:[45,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.correlation.AbsolutePearsonCorrelationDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/subspace/OnedimensionalDistanceFunction.java:[47,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.subspace.OnedimensionalDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/metrical/mtreevariants/mktrees/AbstractMkTreeUnified.java:[94,35]
batchNN(N,de.lmu.ifi.dbs.elki.database.ids.DBIDs,int) in
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.AbstractMkTree
has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/metrical/mtreevariants/AbstractMTreeNode.java:[45,17]
serializable class
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.AbstractMTreeNode has no
definition of serialVersionUID
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/correlation/UncenteredCorrelationDistanceFunction.java:[39,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.correlation.UncenteredCorrelationDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/minkowski/SquaredEuclideanDistanceFunction.java:[44,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.minkowski.SquaredEuclideanDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/minkowski/LPNormDistanceFunction.java:[47,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.minkowski.LPNormDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/minkowski/WeightedLPNormDistanceFunction.java:[44,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.minkowski.WeightedLPNormDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/minkowski/WeightedMaximumDistanceFunction.java:[41,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.minkowski.WeightedMaximumDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/BitVector.java:[48,8]
byteValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/BitVector.java:[48,8]
shortValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/BitVector.java:[113,15]
longValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/BitVector.java:[48,8]
intValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/BitVector.java:[48,8]
floatValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/BitVector.java:[108,17]
doubleValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/BitVector.java:[48,8]
Class de.lmu.ifi.dbs.elki.data.BitVector overrides equals, but neither it nor
any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/utilities/pairs/DoubleObjPair.java:[35,8]
Class de.lmu.ifi.dbs.elki.utilities.pairs.DoubleObjPair overrides equals, but
neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/query/DoubleDistanceSearchCandidate.java:[33,8]
Class de.lmu.ifi.dbs.elki.index.tree.query.DoubleDistanceSearchCandidate
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/metrical/mtreevariants/mktrees/mkmax/MkMaxTree.java:[106,35]
batchNN(N,de.lmu.ifi.dbs.elki.database.ids.DBIDs,int) in
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.AbstractMkTree
has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseFloatVector.java:[50,8]
byteValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseFloatVector.java:[50,8]
shortValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseFloatVector.java:[50,8]
intValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseFloatVector.java:[50,8]
floatValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/histogram/KolmogorovSmirnovDistanceFunction.java:[39,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.histogram.KolmogorovSmirnovDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/probabilistic/ChiSquaredDistanceFunction.java:[53,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.probabilistic.ChiSquaredDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/probabilistic/KullbackLeiblerDivergenceAsymmetricDistanceFunction.java:[53,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.probabilistic.KullbackLeiblerDivergenceAsymmetricDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/correlation/WeightedSquaredPearsonCorrelationDistanceFunction.java:[55,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.correlation.WeightedSquaredPearsonCorrelationDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/algorithm/outlier/subspace/AggarwalYuEvolutionary.java:[586,18]
Class
de.lmu.ifi.dbs.elki.algorithm.outlier.subspace.AggarwalYuEvolutionary.Individuum
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/metrical/mtreevariants/mktrees/mkapp/MkAppTree.java:[126,35]
batchNN(N,de.lmu.ifi.dbs.elki.database.ids.DBIDs,int) in
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.AbstractMkTree
has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/database/ids/integer/IntegerDBIDPair.java:[295,17]
get(int) in de.lmu.ifi.dbs.elki.database.ids.ArrayDBIDs has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/database/ids/integer/IntegerDBID.java:[140,15]
get(int) in de.lmu.ifi.dbs.elki.database.ids.ArrayDBIDs has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/timeseries/LCSSDistanceFunction.java:[78,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.timeseries.LCSSDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/minkowski/WeightedEuclideanDistanceFunction.java:[40,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.minkowski.WeightedEuclideanDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/probabilistic/KullbackLeiblerDivergenceReverseAsymmetricDistanceFunction.java:[54,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.probabilistic.KullbackLeiblerDivergenceReverseAsymmetricDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/spatial/rstarvariants/flat/FlatRStarTree.java:[119,5]
getFile() in de.lmu.ifi.dbs.elki.index.tree.IndexTree has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/spatial/rstarvariants/flat/FlatRStarTree.java:[150,5]
getFile() in de.lmu.ifi.dbs.elki.index.tree.IndexTree has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/algorithm/clustering/gdbscan/PreDeConNeighborPredicate.java:[224,16]
found raw type: de.lmu.ifi.dbs.elki.data.type.SimpleTypeInformation
missing type arguments for generic class
de.lmu.ifi.dbs.elki.data.type.SimpleTypeInformation<T>
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/gui/minigui/MiniGUI.java:[217,61]
java.awt.Event in java.awt has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/gui/minigui/MiniGUI.java:[221,61]
java.awt.Event in java.awt has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/gui/util/ParameterTable.java:[827,73]
getModifiers() in java.awt.event.InputEvent has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/minkowski/ManhattanDistanceFunction.java:[39,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.minkowski.ManhattanDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/ArcCosineDistanceFunction.java:[44,8]
Class de.lmu.ifi.dbs.elki.distance.distancefunction.ArcCosineDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/correlation/PearsonCorrelationDistanceFunction.java:[47,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.correlation.PearsonCorrelationDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseDoubleVector.java:[48,8]
byteValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseDoubleVector.java:[48,8]
shortValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseDoubleVector.java:[48,8]
intValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseDoubleVector.java:[48,8]
floatValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/timeseries/EDRDistanceFunction.java:[55,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.timeseries.EDRDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/probabilistic/JeffreyDivergenceDistanceFunction.java:[49,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.probabilistic.JeffreyDivergenceDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/gui/util/TreePopup.java:[359,122]
getModifiers() in java.awt.event.InputEvent has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/gui/util/TreePopup.java:[364,122]
getModifiers() in java.awt.event.InputEvent has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/gui/util/TreePopup.java:[378,122]
getModifiers() in java.awt.event.InputEvent has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/metrical/mtreevariants/mktrees/mkcop/MkCoPTreeNode.java:[157,33]
unchecked cast
required:
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop.MkCoPTree<O>
found:
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.AbstractMTree<O,de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop.MkCoPTreeNode<O>,de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop.MkCoPEntry,capture#1
of ?>
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/minkowski/WeightedManhattanDistanceFunction.java:[41,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.minkowski.WeightedManhattanDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/persistent/PersistentPageFile.java:[225,27]
newInstance() in java.lang.Class has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/database/ids/integer/ArrayModifiableIntegerDBIDs.java:[108,15]
get(int) in de.lmu.ifi.dbs.elki.database.ids.ArrayDBIDs has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/database/ids/integer/ArrayModifiableIntegerDBIDs.java:[410,17]
get(int) in de.lmu.ifi.dbs.elki.database.ids.ArrayDBIDs has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/metrical/mtreevariants/mktrees/mkcop/MkCoPTree.java:[129,35]
batchNN(N,de.lmu.ifi.dbs.elki.database.ids.DBIDs,int) in
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.AbstractMkTree
has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/index/tree/metrical/mtreevariants/mktrees/mkcop/MkCoPTree.java:[158,35]
batchNN(N,de.lmu.ifi.dbs.elki.database.ids.DBIDs,int) in
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.AbstractMkTree
has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/external/DiskCacheBasedDoubleDistanceFunction.java:[51,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.external.DiskCacheBasedDoubleDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/minkowski/EuclideanDistanceFunction.java:[39,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.minkowski.EuclideanDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/type/TypeInformationSerializer.java:[162,104]
newInstance() in java.lang.Class has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/type/TypeInformationSerializer.java:[242,116]
newInstance() in java.lang.Class has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/type/TypeInformationSerializer.java:[332,116]
newInstance() in java.lang.Class has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/timeseries/ERPDistanceFunction.java:[54,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.timeseries.ERPDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/correlation/AbsoluteUncenteredCorrelationDistanceFunction.java:[39,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.correlation.AbsoluteUncenteredCorrelationDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/algorithm/clustering/gdbscan/ERiCNeighborPredicate.java:[147,16]
found raw type: de.lmu.ifi.dbs.elki.data.type.SimpleTypeInformation
missing type arguments for generic class
de.lmu.ifi.dbs.elki.data.type.SimpleTypeInformation<T>
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/database/ids/EmptyDBIDs.java:[67,15]
get(int) in de.lmu.ifi.dbs.elki.database.ids.ArrayDBIDs has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/database/ids/EmptyDBIDs.java:[96,20]
Class de.lmu.ifi.dbs.elki.database.ids.EmptyDBIDs.EmptyDBIDIterator overrides
equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/result/textwriter/naming/SimpleEnumeratingScheme.java:[84,19]
Integer(int) in java.lang.Integer has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/CosineDistanceFunction.java:[44,8]
Class de.lmu.ifi.dbs.elki.distance.distancefunction.CosineDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/external/DiskCacheBasedFloatDistanceFunction.java:[50,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.external.DiskCacheBasedFloatDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/correlation/WeightedPearsonCorrelationDistanceFunction.java:[55,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.correlation.WeightedPearsonCorrelationDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/application/internal/CheckParameterizables.java:[238,15]
newInstance() in java.lang.Class has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/minkowski/MinimumDistanceFunction.java:[39,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.minkowski.MinimumDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/database/ids/integer/ArrayStaticIntegerDBIDs.java:[79,15]
get(int) in de.lmu.ifi.dbs.elki.database.ids.ArrayDBIDs has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/database/ids/integer/ArrayStaticIntegerDBIDs.java:[117,13]
Class de.lmu.ifi.dbs.elki.database.ids.integer.ArrayStaticIntegerDBIDs.Itr
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/database/ids/integer/ArrayStaticIntegerDBIDs.java:[224,17]
get(int) in de.lmu.ifi.dbs.elki.database.ids.ArrayDBIDs has been deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/colorhistogram/HSBHistogramQuadraticDistanceFunction.java:[52,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.colorhistogram.HSBHistogramQuadraticDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/colorhistogram/RGBHistogramQuadraticDistanceFunction.java:[51,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.colorhistogram.RGBHistogramQuadraticDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/minkowski/WeightedSquaredEuclideanDistanceFunction.java:[45,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.minkowski.WeightedSquaredEuclideanDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/algorithm/clustering/gdbscan/FourCNeighborPredicate.java:[180,16]
found raw type: de.lmu.ifi.dbs.elki.data.type.SimpleTypeInformation
missing type arguments for generic class
de.lmu.ifi.dbs.elki.data.type.SimpleTypeInformation<T>
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/distance/distancefunction/minkowski/MaximumDistanceFunction.java:[38,8]
Class
de.lmu.ifi.dbs.elki.distance.distancefunction.minkowski.MaximumDistanceFunction
overrides equals, but neither it nor any superclass overrides hashCode method
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseByteVector.java:[239,15]
byteValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseByteVector.java:[48,8]
shortValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseByteVector.java:[48,8]
intValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseByteVector.java:[48,8]
floatValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseIntegerVector.java:[48,8]
byteValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseIntegerVector.java:[48,8]
shortValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[WARNING]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/data/SparseIntegerVector.java:[48,8]
floatValue(int) in de.lmu.ifi.dbs.elki.data.SparseNumberVector has been
deprecated
[INFO]
/<<PKGBUILDDIR>>/elki/src/main/java/de/lmu/ifi/dbs/elki/database/ids/integer/IntegerDBIDRange.java:
Some input files additionally use or override a deprecated API.
[INFO]
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @
elki ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 43 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ elki
---
[INFO] Compiling 203 source files to /<<PKGBUILDDIR>>/elki/target/test-classes
[WARNING] bootstrap class path not set in conjunction with -source 7
[INFO]
[INFO] --- maven-surefire-plugin:2.22.1:test (default-test) @ elki ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-resources-plugin:3.1.0:copy-resources (copy-resources) @ elki
---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 14 resources
[INFO]
[INFO] --- exec-maven-plugin:1.6.0:exec (generate-javadoc-parameters) @ elki ---
Timeout on instantiating de.lmu.ifi.dbs.elki.gui.util.TreePopup
java.util.concurrent.TimeoutException
java.lang.RuntimeException: java.util.concurrent.TimeoutException
at
de.lmu.ifi.dbs.elki.application.internal.DocumentParameters.buildParameterIndex(DocumentParameters.java:318)
at
de.lmu.ifi.dbs.elki.application.internal.DocumentParameters.main(DocumentParameters.java:150)
Caused by: java.util.concurrent.TimeoutException
at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:204)
at
de.lmu.ifi.dbs.elki.application.internal.DocumentParameters.buildParameterIndex(DocumentParameters.java:313)
at
de.lmu.ifi.dbs.elki.application.internal.DocumentParameters.main(DocumentParameters.java:150)
[ERROR] Command execution failed.
org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit
value: 1)
at org.apache.commons.exec.DefaultExecutor.executeInternal
(DefaultExecutor.java:404)
at org.apache.commons.exec.DefaultExecutor.execute
(DefaultExecutor.java:166)
at org.codehaus.mojo.exec.ExecMojo.executeCommandLine (ExecMojo.java:804)
at org.codehaus.mojo.exec.ExecMojo.executeCommandLine (ExecMojo.java:751)
at org.codehaus.mojo.exec.ExecMojo.execute (ExecMojo.java:313)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo
(DefaultBuildPluginManager.java:137)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute
(MojoExecutor.java:210)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute
(MojoExecutor.java:156)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute
(MojoExecutor.java:148)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject
(LifecycleModuleBuilder.java:117)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject
(LifecycleModuleBuilder.java:81)
at
org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build
(SingleThreadedBuilder.java:56)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute
(LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192)
at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105)
at org.apache.maven.cli.MavenCli.execute (MavenCli.java:956)
at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:288)
at org.apache.maven.cli.MavenCli.main (MavenCli.java:192)
at org.apache.maven.cli.MavenCli.main (MavenCli.java:181)
at org.debian.maven.Wrapper.main (Wrapper.java:89)
at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
at jdk.internal.reflect.NativeMethodAccessorImpl.invoke
(NativeMethodAccessorImpl.java:62)
at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke
(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke (Method.java:566)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard
(Launcher.java:321)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch
(Launcher.java:234)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode
(Launcher.java:406)
at org.codehaus.plexus.classworlds.launcher.Launcher.main
(Launcher.java:347)
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for ELKI Data Mining Framework - Parent Project 0.7.1:
[INFO]
[INFO] ELKI Data Mining Framework - Parent Project ........ SUCCESS [ 4.473 s]
[INFO] ELKI Data Mining Framework ......................... FAILURE [01:20 min]
[INFO] ELKI Data Mining Framework - Batik Visualization ... SKIPPED
[INFO] ELKI Data Mining Framework - Tutorial Algorithms ... SKIPPED
[INFO] ELKI Data Mining Framework - LibSVM based extensions SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 01:25 min
[INFO] Finished at: 2019-03-05T21:54:49Z
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.codehaus.mojo:exec-maven-plugin:1.6.0:exec
(generate-javadoc-parameters) on project elki: Command execution failed.
Process exited with an error: 1 (Exit value: 1) -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e
switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please
read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :elki
dh_auto_build: /usr/lib/jvm/java-11-openjdk-amd64/bin/java -noverify -cp
/usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven
-Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>>
-Dclassworlds.conf=/etc/maven/m2-debian.conf
-Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties
org.codehaus.plexus.classworlds.launcher.Launcher
-s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian
-Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package
-DskipTests -Dnotimestamp=true -Dlocale=en_US returned exit code 1
make: *** [debian/rules:9: build-indep] Error 1
dpkg-buildpackage: error: debian/rules build-indep subprocess returned exit
status 2
--------------------------------------------------------------------------------
Similar failures may be seen here in a random fashion:
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/elki.html
I googled a little bit and found this:
https://github.com/elki-project/elki/issues/10
and based on that maybe the patch below might work, but it's completely
untested.
If unsure, a possibility would be to apply the patch to experimental
and see the effect on the reproducible-builds autobuilders (which
also build packages in experimental), then upload for unstable
if it works.
Thanks.
---
a/elki/src/main/java/de/lmu/ifi/dbs/elki/application/internal/DocumentParameters.java
+++
b/elki/src/main/java/de/lmu/ifi/dbs/elki/application/internal/DocumentParameters.java
@@ -310,7 +310,7 @@ public class DocumentParameters {
es.submit(instantiator);
try {
// Wait up to one second.
- instantiator.get(1L, TimeUnit.SECONDS);
+ instantiator.get(10L, TimeUnit.SECONDS);
}
catch(TimeoutException e) {
LOG.warning("Timeout on instantiating " + cls.getName());
