Your message dated Fri, 01 Mar 2019 13:50:06 +0000
with message-id <e1gziya-000h0x...@fasolo.debian.org>
and subject line Bug#923474: fixed in libbpp-core 2.4.1-3
has caused the Debian Bug report #923474,
regarding libbpp-core: FTBFS (dh_makeshlibs fails)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
923474: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=923474
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:libbpp-core
Version: 2.4.1-2
Severity: serious
Tags: ftbfs
Dear maintainer:
I tried to build this package in buster but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc
-DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
"-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON
-DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ..
-- The CXX compiler identification is GNU 8.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
[... snipped ...]
+#MISSING: 2.4.1-2# _ZNSt6vectorIjSaIjEE9push_backERKj@Base 2.4.1
_ZNSt6vectorImSaImEE17_M_default_appendEm@Base 2.4.1
_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base
2.4.1
_ZNSt6vectorImSaImEEaSERKS1_@Base 2.4.1
@@ -2225,6 +2232,7 @@
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_@Base
2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE7_M_copyINSE_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS8_EPKSI_PSt18_Rb_tree_node_baseRT_@Base
2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base
2.4.1
+
_ZNSt8_Rb_treeIPN3bpp13GraphObserverES2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE16_M_insert_uniqueIRKS2_EESt4pairISt17_Rb_tree_iteratorIS2_EbEOT_@Base
2.4.1-2
_ZNSt8_Rb_treeIPN3bpp13GraphObserverES2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE7_M_copyINS8_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base
2.4.1
_ZNSt8_Rb_treeIPN3bpp13GraphObserverES2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE7_M_copyINS8_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base
2.4.1
_ZNSt8_Rb_treeIPN3bpp13GraphObserverES2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base
2.4.1
@@ -2267,16 +2275,17 @@
_ZNSt8_Rb_treeIjSt4pairIKjS0_IjjEESt10_Select1stIS3_ESt4lessIjESaIS3_EEaSERKS9_@Base
2.4.1
_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE12_M_erase_auxESt23_Rb_tree_const_iteratorIS2_E@Base
2.4.1
(optional)_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSA_PSt13_Rb_tree_nodeIS2_E@Base
2.4.1
-
(optional)_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE16_M_insert_uniqueIS0_IjjEEES0_ISt17_Rb_tree_iteratorIS2_EbEOT_@Base
2.4.1
+#MISSING: 2.4.1-2#
(optional)_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE16_M_insert_uniqueIS0_IjjEEES0_ISt17_Rb_tree_iteratorIS2_EbEOT_@Base
2.4.1
(optional)_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE17_M_emplace_uniqueIJS0_IjjEEEES0_ISt17_Rb_tree_iteratorIS2_EbEDpOT_@Base
2.4.1
_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE24_M_get_insert_unique_posERS1_@Base
2.4.1
_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
2.4.1
_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE7_M_copyINS8_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base
2.4.1
_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base
2.4.1
_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE16_M_insert_uniqueIRKjEESt4pairISt17_Rb_tree_iteratorIjEbEOT_@Base
2.4.1
- _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE5eraseERKj@Base 2.4.1
+#MISSING: 2.4.1-2#
_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE5eraseERKj@Base 2.4.1
_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE8_M_eraseEPSt13_Rb_tree_nodeIjE@Base
2.4.1
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSD_PSt13_Rb_tree_nodeIS5_E@Base
2.4.1
+
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOmEESG_IJEEEEESt17_Rb_tree_iteratorIS5_ESt23_Rb_tree_const_iteratorIS5_EDpOT_@Base
2.4.1-2
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE24_M_get_insert_unique_posERS1_@Base
2.4.1
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_@Base
2.4.1
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE7_M_copyINSB_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS5_EPKSF_PSt18_Rb_tree_node_baseRT_@Base
2.4.1
@@ -2284,6 +2293,7 @@
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E@Base
2.4.1
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EEaSERKSB_@Base
2.4.1
_ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSG_PSt13_Rb_tree_nodeIS8_E@Base
2.4.1
+
_ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOsEESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base
2.4.1-2
_ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base
2.4.1
_ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE24_M_get_insert_unique_posERS1_@Base
2.4.1
_ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_@Base
2.4.1
dh_makeshlibs: failing due to earlier errors
make[1]: *** [debian/rules:15: override_dh_makeshlibs] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:10: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned
exit status 2
--------------------------------------------------------------------------------
(The above is just how the build ends and not necessarily the most relevant
part)
The build was made in my autobuilder with "dpkg-buildpackage -B".
I've also triggered rebuilds here:
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libbpp-core.html
where you will be able to get a full build log if you need it.
If this is really a bug in one of the build-depends, please use reassign and
affects,
so that this is still visible in the BTS web page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: libbpp-core
Source-Version: 2.4.1-3
We believe that the bug you reported is fixed in the latest version of
libbpp-core, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 923...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated libbpp-core package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 01 Mar 2019 14:16:27 +0100
Source: libbpp-core
Binary: libbpp-core-dev libbpp-core4
Architecture: source
Version: 2.4.1-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
libbpp-core-dev - Bio++ Core library development files
libbpp-core4 - Bio++ Core library
Closes: 923474
Changes:
libbpp-core (2.4.1-3) unstable; urgency=medium
.
* More sensible way to provide symbols amd64 only
* Rebuild for new version of gcc to fix symbols
Closes: #923474
* Standards-Version: 4.3.0
Checksums-Sha1:
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d5392de0d3706aed1df04c88932db2d6359ded79 32528
libbpp-core_2.4.1-3.debian.tar.xz
Checksums-Sha256:
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libbpp-core_2.4.1-3.dsc
c595aad8040ae306ec481bef08d53cdde7846633ce2f3301da93239d9dfdca96 32528
libbpp-core_2.4.1-3.debian.tar.xz
Files:
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9f1ffc0076a9b091273b36977f7f6624 32528 science optional
libbpp-core_2.4.1-3.debian.tar.xz
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--- End Message ---
