Your message dated Thu, 21 Feb 2019 19:20:05 +0000
with message-id <e1gwtt7-00017m...@fasolo.debian.org>
and subject line Bug#922256: fixed in nitime 0.7-2
has caused the Debian Bug report #922256,
regarding nitime: FTBFS (Could not import extension sphinx.ext.pngmath)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
922256: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=922256
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:nitime
Version: 0.7-1
Severity: serious
Tags: ftbfs
Dear maintainer:
I tried to build this package in buster but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-indep
dh build-indep --with python2
dh_update_autotools_config -i
dh_auto_configure -i
dh_auto_configure: Please use the third-party "pybuild" build system instead of
python-distutils
dh_auto_configure: This feature will be removed in compat 12.
dh_auto_build -i
dh_auto_build: Please use the third-party "pybuild" build system instead of
python-distutils
dh_auto_build: This feature will be removed in compat 12.
python setup.py build --force
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
[... snipped ...]
zt /= st[sl]
/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python2.7/dist-packages/nitime/viz.py:1391:
RuntimeWarning: divide by zero encountered in log
toplot = np.log(toplot)
/usr/lib/python2.7/dist-packages/matplotlib/cbook/deprecation.py:107:
MatplotlibDeprecationWarning: Adding an axes using the same arguments as a
previous axes currently reuses the earlier instance. In a future version, a
new instance will always be created and returned. Meanwhile, this warning can
be suppressed, and the future behavior ensured, by passing a unique label to
each axes instance.
warnings.warn(message, mplDeprecation, stacklevel=1)
grasshopper.py
snr_example.py
mtm_baseband_power.py
event_related_fmri.py
ar_est_3vars.py
mtm_harmonic_test.py
('freqs:', array([0.02217944, 0.02897103, 0.05012797]), '\testimated:',
array([0.02218628, 0.02897644, 0.05012512]), '\terr: 8.410e-11')
('amp:', array([1.14652768, 1.5882896 , 0.77338958]), '\testimated:',
array([1.13804782, 1.59692699, 0.76345026]), '\terr: 5.531e-05')
('phase:', array([3.28272585, 4.84241539, 1.8610345 ]), '\testimated:',
array([3.07380887, 4.66664496, 1.98370608]), '\terr: 8.959e-02')
MS error over noise: 2.350e-02
granger_fmri.py
seed_analysis.py
multi_taper_coh.py
resting_state_fmri.py
ar_est_1var.py
ar_model_fit.py
filtering_fmri.py
multi_taper_spectral_estimation.py
ar_est_2vars.py
python ../tools/build_modref_templates.py
('WARNING: Empty -', 'nitime')
('WARNING: Empty -', 'nitime.algorithms')
('WARNING: Empty -', 'nitime.analysis')
('WARNING: Empty -', 'nitime.fmri')
('WARNING: Empty -', 'nitime.version')
25 files written
Build API docs finished.
sphinx-build -b html -d _build/doctrees . _build/html
Running Sphinx v1.8.3
/usr/lib/python2.7/dist-packages/matplotlib/cbook/deprecation.py:107:
MatplotlibDeprecationWarning: The mpl_toolkits.axes_grid module was deprecated
in version 2.1. Use mpl_toolkits.axes_grid1 and mpl_toolkits.axisartist provies
the same functionality instead.
warnings.warn(message, mplDeprecation, stacklevel=1)
Extension error:
Could not import extension sphinx.ext.pngmath (exception: No module named
pngmath)
make[2]: *** [Makefile:35: htmlonly] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[1]: *** [debian/rules:28: override_dh_auto_install] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:16: binary-indep] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-indep subprocess
returned exit status 2
--------------------------------------------------------------------------------
(The above is just how the build ends and not necessarily the most relevant
part)
The build was made in my autobuilder with "dpkg-buildpackage -A"
and it also fails here:
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/nitime.html
where you can get a full build log if you need it.
If this is really a bug in one of the build-depends, please use reassign and
affects,
so that this is still visible in the BTS web page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: nitime
Source-Version: 0.7-2
We believe that the bug you reported is fixed in the latest version of
nitime, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 922...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Yaroslav Halchenko <deb...@onerussian.com> (supplier of updated nitime package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 21 Feb 2019 12:50:06 -0500
Source: nitime
Binary: python-nitime python-nitime-doc
Architecture: source all
Version: 0.7-2
Distribution: unstable
Urgency: high
Maintainer: NeuroDebian Team <t...@neuro.debian.net>
Changed-By: Yaroslav Halchenko <deb...@onerussian.com>
Description:
python-nitime - timeseries analysis for neuroscience data (nitime)
python-nitime-doc - timeseries analysis for neuroscience data (nitime) --
documentati
Closes: 922256
Changes:
nitime (0.7-2) unstable; urgency=high
.
* Use mathjax sphinx.ext if no pngmath is available (Closes: #922256)
* debian/control
- boost policy to 4.3.0
- remove obsolete X-Python*
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