Your message dated Fri, 18 Jan 2019 23:07:05 +0000
with message-id <e1gkde9-000853...@fasolo.debian.org>
and subject line Bug#897795: fixed in librcsb-core-wrapper 1.005-6
has caused the Debian Bug report #897795,
regarding librcsb-core-wrapper: ftbfs with GCC-8
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
897795: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=897795
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:librcsb-core-wrapper
Version: 1.005-5
Severity: normal
Tags: sid buster
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-8
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-8/g++-8, but succeeds to build with gcc-7/g++-7. The
severity of this report will be raised before the buster release.
The full build log can be found at:
http://aws-logs.debian.net/2018/05/01/gcc8/librcsb-core-wrapper_1.005-5_unstable_gcc8.log.gz
The last lines of the build log are at the end of this report.
To build with GCC 8, either set CC=gcc-8 CXX=g++-8 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-8/porting_to.html
[...]
libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/GenCont.C -o ./obj/GenCont.o >/dev/null 2>&1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/common'
make[3]: Entering directory '/<<PKGBUILDDIR>>/common'
libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/RcsbFile.C -o ./obj/RcsbFile.o
libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/RcsbFile.C -fPIC -DPIC -o ./obj/.libs/RcsbFile.o
libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/RcsbFile.C -o ./obj/RcsbFile.o >/dev/null 2>&1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/common'
make[3]: Entering directory '/<<PKGBUILDDIR>>/common'
libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/GenString.C -o ./obj/GenString.o
libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/GenString.C -fPIC -DPIC -o ./obj/.libs/GenString.o
src/GenString.C: In static member function 'static bool String::IsNumber(const
string&)':
src/GenString.C:539:12: error: catching polymorphic type 'class std::exception'
by value [-Werror=catch-value=]
catch (exception)
^~~~~~~~~
cc1plus: all warnings being treated as errors
make[3]: *** [Makefile:156: GenString.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/common'
make[3]: *** Waiting for unfinished jobs....
make[3]: Entering directory '/<<PKGBUILDDIR>>/common'
libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/CifString.C -o ./obj/CifString.o
libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/CifString.C -fPIC -DPIC -o ./obj/.libs/CifString.o
libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/CifString.C -o ./obj/CifString.o >/dev/null 2>&1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/common'
make[3]: Entering directory '/<<PKGBUILDDIR>>/common'
libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/mapped_vector.C -o ./obj/mapped_vector.o
libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/mapped_vector.C -fPIC -DPIC -o ./obj/.libs/mapped_vector.o
libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/mapped_vector.C -o ./obj/mapped_vector.o >/dev/null 2>&1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/common'
make[3]: Entering directory '/<<PKGBUILDDIR>>/common'
libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/mapped_ptr_vector.C -o ./obj/mapped_ptr_vector.o
libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/mapped_ptr_vector.C -fPIC -DPIC -o
./obj/.libs/mapped_ptr_vector.o
libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/mapped_ptr_vector.C -o ./obj/mapped_ptr_vector.o >/dev/null
2>&1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/common'
make[3]: Entering directory '/<<PKGBUILDDIR>>/common'
libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/DataInfo.C -o ./obj/DataInfo.o
libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/DataInfo.C -fPIC -DPIC -o ./obj/.libs/DataInfo.o
libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/DataInfo.C -o ./obj/DataInfo.o >/dev/null 2>&1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/common'
make[3]: Entering directory '/<<PKGBUILDDIR>>/common'
libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/Serializer.C -o ./obj/Serializer.o
libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/Serializer.C -fPIC -DPIC -o ./obj/.libs/Serializer.o
libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O -fPIC -std=c++11 -Werror -Wall -Wno-deprecated
-DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include
-I../include -c src/Serializer.C -o ./obj/Serializer.o >/dev/null 2>&1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/common'
libtool: error: 'lib/*.lo' is not a valid libtool object
make[2]: *** [Makefile:107: lib/librcsb-core-wrapper.la] Error 1
dh_auto_build: make -j8 -Oline returned exit code 2
make[1]: *** [debian/rules:19: override_dh_auto_build-nopy] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:14: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit
status 2
--- End Message ---
--- Begin Message ---
Source: librcsb-core-wrapper
Source-Version: 1.005-6
We believe that the bug you reported is fixed in the latest version of
librcsb-core-wrapper, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 897...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <michael.cru...@gmail.com> (supplier of updated
librcsb-core-wrapper package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 18 Jan 2019 14:14:40 -0800
Source: librcsb-core-wrapper
Binary: librcsb-core-wrapper0 librcsb-core-wrapper0-dev
librcsb-core-wrapper-doc python-corepywrap
Architecture: source
Version: 1.005-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
librcsb-core-wrapper-doc - documentation for librcsb-core-wrapper0
librcsb-core-wrapper0 - C++ library providing OO API to information in mmCIF
format
librcsb-core-wrapper0-dev - development files for librcsb-core-wrapper0
python-corepywrap - library that exports C++ mmCIF accessors to Python
Closes: 897795
Changes:
librcsb-core-wrapper (1.005-6) unstable; urgency=medium
.
* Team uploade
.
[ Andreas Tille ]
* Drop unneeded get-orig-source target
* Fix build error with gcc-8
Closes: #897795
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Testsuite: autopkgtest-pkg-python
* No Priority: extra
* Drop ancient field X-Python-Version
.
[ Michael R. Crusoe ]
* Adapt patches for latest boost version
* debian/watch: use secure HTTPS URL
* Standards-Version: 4.3.0, no changes needed
* Remove trailing whitespace in debian/copyright
* Remove trailing whitespace in debian/rules
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--- End Message ---