Your message dated Sun, 06 Jan 2019 18:49:38 +0000
with message-id <e1ggduq-000hbw...@fasolo.debian.org>
and subject line Bug#917591: fixed in libbpp-seq-omics 2.4.1-2
has caused the Debian Bug report #917591,
regarding libbpp-seq-omics: FTBFS (dh_makeshlibs fails)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
917591: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=917591
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:libbpp-seq-omics
Version: 2.4.1-1
Severity: serious
Tags: ftbfs
Dear maintainer:
I tried to build this package in buster but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc
-DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
"-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON
-DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ..
-- The CXX compiler identification is GNU 8.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- bpp-core 4.1.0 found:
[... snipped ...]
_ZNK3bpp13AlphabetState5cloneEv@Base 2.4.1
_ZNK3bpp13CodonAlphabet23getUnknownCharacterCodeEv@Base 2.4.1
_ZNK3bpp14LetterAlphabet16isCharInAlphabetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base
2.4.1
@@ -991,9 +991,9 @@
_ZThn8_N3bpp22SequenceWithAnnotation10setContentERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EE@Base
2.4.1
_ZThn8_N3bpp22SequenceWithAnnotation10setContentERKSt6vectorIiSaIiEE@Base
2.4.1
_ZTv0_n112_NK3bpp23VectorSequenceContainer20getNumberOfSequencesEv@Base 2.4.1
- _ZTv0_n144_NK3bpp12SequenceMask7getTypeB5cxx11Ev@Base 2.4.1
+#MISSING: 2.4.1-1# _ZTv0_n144_NK3bpp12SequenceMask7getTypeB5cxx11Ev@Base 2.4.1
_ZTv0_n144_NK3bpp15SequenceQuality7getTypeB5cxx11Ev@Base 2.4.1
-
_ZTv0_n152_NK3bpp12SequenceMask11isValidWithERKNS_22SequenceWithAnnotationEb@Base
2.4.1
+#MISSING: 2.4.1-1#
_ZTv0_n152_NK3bpp12SequenceMask11isValidWithERKNS_22SequenceWithAnnotationEb@Base
2.4.1
_ZTv0_n152_NK3bpp15SequenceQuality11isValidWithERKNS_22SequenceWithAnnotationEb@Base
2.4.1
_ZTv0_n168_NK3bpp12EdSymbolListixEm@Base 2.4.1
_ZTv0_n168_NK3bpp15BasicSymbolListixEm@Base 2.4.1
@@ -1003,7 +1003,7 @@
_ZTv0_n24_N3bpp10BppIntegerD1Ev@Base 2.4.1
_ZTv0_n24_N3bpp11MafSequenceD0Ev@Base 2.4.1
_ZTv0_n24_N3bpp11MafSequenceD1Ev@Base 2.4.1
- _ZTv0_n24_N3bpp12SequenceMaskD0Ev@Base 2.4.1
+#MISSING: 2.4.1-1# _ZTv0_n24_N3bpp12SequenceMaskD0Ev@Base 2.4.1
_ZTv0_n24_N3bpp13AlphabetStateD0Ev@Base 2.4.1
_ZTv0_n24_N3bpp13AlphabetStateD1Ev@Base 2.4.1
_ZTv0_n24_N3bpp13BasicSequenceD0Ev@Base 2.4.1
@@ -1142,7 +1142,7 @@
_ZTv0_n48_N3bpp25SimpleMafStatisticsResult8setValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi@Base
2.4.1
_ZTv0_n48_N3bpp36CsvStatisticsOutputIterationListener14iterationStopsEv@Base
2.4.1
_ZTv0_n48_NK3bpp12EdSymbolList11getAlphabetEv@Base 2.4.1
- _ZTv0_n48_NK3bpp12SequenceMask11isRemovableEv@Base 2.4.1
+#MISSING: 2.4.1-1# _ZTv0_n48_NK3bpp12SequenceMask11isRemovableEv@Base 2.4.1
_ZTv0_n48_NK3bpp15SequenceQuality11isRemovableEv@Base 2.4.1
_ZTv0_n48_NK3bpp21AbstractMafStatistics9getResultEv@Base 2.4.1
_ZTv0_n48_NK3bpp22SequenceWithAnnotation7getNameB5cxx11Ev@Base 2.4.1
@@ -1162,7 +1162,7 @@
_ZTv0_n56_N3bpp34SiteFrequencySpectrumMafStatistics7computeERKNS_8MafBlockE@Base
2.4.1
_ZTv0_n56_N3bpp37FourSpeciesPatternCountsMafStatistics7computeERKNS_8MafBlockE@Base
2.4.1
_ZTv0_n56_NK3bpp12EdSymbolList4sizeEv@Base 2.4.1
- _ZTv0_n56_NK3bpp12SequenceMask8isSharedEv@Base 2.4.1
+#MISSING: 2.4.1-1# _ZTv0_n56_NK3bpp12SequenceMask8isSharedEv@Base 2.4.1
_ZTv0_n56_NK3bpp15BasicSymbolList4sizeEv@Base 2.4.1
_ZTv0_n56_NK3bpp15SequenceQuality8isSharedEv@Base 2.4.1
_ZTv0_n64_N3bpp16GffFeatureReader21getFeaturesOfSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERNS_18SequenceFeatureSetE@Base
2.4.1
dh_makeshlibs: failing due to earlier errors
make[1]: *** [debian/rules:15: override_dh_makeshlibs] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:10: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned
exit status 2
--------------------------------------------------------------------------------
The build was made in my autobuilder with "dpkg-buildpackage -B"
but it also fails here:
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libbpp-seq-omics.html
where you can get a full build log if you need it.
If this is really a bug in one of the build-depends, please use reassign and
affects,
so that this is still visible in the BTS web page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: libbpp-seq-omics
Source-Version: 2.4.1-2
We believe that the bug you reported is fixed in the latest version of
libbpp-seq-omics, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 917...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated libbpp-seq-omics package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 06 Jan 2019 17:30:24 +0100
Source: libbpp-seq-omics
Binary: libbpp-seq-omics-dev libbpp-seq-omics3
Architecture: source
Version: 2.4.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
libbpp-seq-omics-dev - Bio++ Sequence library: genomics components
(development files)
libbpp-seq-omics3 - Bio++ Sequence library: genomics components
Closes: 917591
Changes:
libbpp-seq-omics (2.4.1-2) unstable; urgency=medium
.
[ Jelmer Vernooij ]
* Use secure copyright file specification URI.
* Trim trailing whitespace.
.
[ Andreas Tille ]
* Easier way to provide symbols for amd64 only
* Adapt symbols
Closes: #917591
* Standards-Version: 4.3.0
* Remove trailing whitespace in debian/copyright
Checksums-Sha1:
df1aa515501ff0a1d4f1a355719a0c5478ad4e4e 2216 libbpp-seq-omics_2.4.1-2.dsc
9f372cc88be82556ade5a4fdfe2ae1de9cba130d 16960
libbpp-seq-omics_2.4.1-2.debian.tar.xz
Checksums-Sha256:
096fd1836bb12ae93495898109e6d30d4e3bbe3dca2a25aa64c47fc374dbc573 2216
libbpp-seq-omics_2.4.1-2.dsc
e63aa79982b5911fdc3d996a653e991f17d64735cbb3909a889c8d9c8653c2f3 16960
libbpp-seq-omics_2.4.1-2.debian.tar.xz
Files:
b0ffe9ab7893d82b0f35eb485f1a5d0e 2216 science optional
libbpp-seq-omics_2.4.1-2.dsc
621800926d02435739a12eadb6068589 16960 science optional
libbpp-seq-omics_2.4.1-2.debian.tar.xz
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--- End Message ---
