Package: src:biojava4-live
Version: 4.2.11+dfsg-1
Severity: serious
Tags: ftbfs
Dear maintainer:
I tried to build this package in buster but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-indep
dh build-indep --with javahelper
dh_update_autotools_config -i
dh_autoreconf -i
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/biojava4-live-4.2.11+dfsg'
dh_auto_configure
sed -e 's/BJLIB/biojava4-forester/g' debian/build.xml >
biojava-forester/build.xml
sed -e 's/BJLIB/biojava4-aa-prop/g' debian/build.xml > biojava-aa-prop/build.xml
sed -e 's/BJLIB/biojava4-core/g' debian/build.xml > biojava-core/build.xml
sed -e 's/BJLIB/biojava4-alignment/g' debian/build.xml >
biojava-alignment/build.xml
sed -e 's/BJLIB/biojava4-genome/g' debian/build.xml > biojava-genome/build.xml
sed -e 's/BJLIB/biojava4-modfinder/g' debian/build.xml >
biojava-modfinder/build.xml
sed -e 's/BJLIB/biojava4-phylo/g' debian/build.xml > biojava-phylo/build.xml
[... snipped ...]
[javac] location: class PeptidePropertiesImpl
[javac]
/<<BUILDDIR>>/biojava4-live-4.2.11+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/PeptidePropertiesImpl.java:147:
error: cannot find symbol
[javac] JAXBContext jc2 =
JAXBContext.newInstance(aTable.getClass());
[javac] ^
[javac] symbol: class JAXBContext
[javac] location: class PeptidePropertiesImpl
[javac]
/<<BUILDDIR>>/biojava4-live-4.2.11+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/PeptidePropertiesImpl.java:147:
error: cannot find symbol
[javac] JAXBContext jc2 =
JAXBContext.newInstance(aTable.getClass());
[javac] ^
[javac] symbol: variable JAXBContext
[javac] location: class PeptidePropertiesImpl
[javac]
/<<BUILDDIR>>/biojava4-live-4.2.11+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/PeptidePropertiesImpl.java:148:
error: cannot find symbol
[javac] Unmarshaller u2 = jc2.createUnmarshaller();
[javac] ^
[javac] symbol: class Unmarshaller
[javac] location: class PeptidePropertiesImpl
[javac]
/<<BUILDDIR>>/biojava4-live-4.2.11+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/MyValidationEventHandler.java:34:
error: method does not override or implement a method from a supertype
[javac] @Override
[javac] ^
[javac]
/<<BUILDDIR>>/biojava4-live-4.2.11+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/MyValidationEventHandler.java:36:
error: cannot find symbol
[javac] if (ve.getSeverity() == ValidationEvent.FATAL_ERROR ||
ve.getSeverity() == ValidationEvent.ERROR){
[javac] ^
[javac] symbol: variable ValidationEvent
[javac] location: class MyValidationEventHandler
[javac]
/<<BUILDDIR>>/biojava4-live-4.2.11+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/MyValidationEventHandler.java:36:
error: cannot find symbol
[javac] if (ve.getSeverity() == ValidationEvent.FATAL_ERROR ||
ve.getSeverity() == ValidationEvent.ERROR){
[javac]
^
[javac] symbol: variable ValidationEvent
[javac] location: class MyValidationEventHandler
[javac]
/<<BUILDDIR>>/biojava4-live-4.2.11+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/MyValidationEventHandler.java:37:
error: cannot find symbol
[javac] ValidationEventLocator locator =
ve.getLocator();
[javac] ^
[javac] symbol: class ValidationEventLocator
[javac] location: class MyValidationEventHandler
[javac]
/<<BUILDDIR>>/biojava4-live-4.2.11+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/SchemaGenerator.java:36:
error: method does not override or implement a method from a supertype
[javac] @Override
[javac] ^
[javac] 83 errors
BUILD FAILED
/<<BUILDDIR>>/biojava4-live-4.2.11+dfsg/biojava-aa-prop/build.xml:93: Compile
failed; see the compiler error output for details.
Total time: 9 seconds
make[1]: *** [debian/rules:39: override_dh_auto_build] Error 1
make[1]: Leaving directory '/<<BUILDDIR>>/biojava4-live-4.2.11+dfsg'
make: *** [debian/rules:12: build-indep] Error 2
dpkg-buildpackage: error: debian/rules build-indep subprocess returned exit
status 2
--------------------------------------------------------------------------------
The build was made in my autobuilder with "dpkg-buildpackage -A"
but it also fails here:
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/biojava4-live.html
where you can get a full build log if you need it.
If this is really a bug in one of the build-depends, please use reassign and
affects,
so that this is still visible in the BTS web page for this package.
Thanks.
