Your message dated Wed, 19 Dec 2018 21:19:25 +0000
with message-id <e1gzjfv-000hbx...@fasolo.debian.org>
and subject line Bug#916800: fixed in phybin 0.3-3
has caused the Debian Bug report #916800,
regarding phybin: FTBFS with newer GHC
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
916800: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=916800
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: phybin
Version: 0.3-2
Severity: serious
Justification: fails to build from source (but built successfully in the past)
Dear maintainer,
phybin FTBFS with newer versions of GHC (>= 8.4) with the following error:
[1 of 9] Compiling Bio.Phylogeny.PhyBin.CoreTypes (
Bio/Phylogeny/PhyBin/CoreTypes.hs,
dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o )
Bio/Phylogeny/PhyBin/CoreTypes.hs:112:35: error:
Ambiguous occurrence `<>'
It could refer to either `Prelude.<>',
imported from
`Prelude' at Bio/Phylogeny/PhyBin/CoreTypes.hs:7:8-37
(and
originally defined in `GHC.Base')
or
`Text.PrettyPrint.HughesPJClass.<>',
imported from
`Text.PrettyPrint.HughesPJClass' at Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1-58
(and
originally defined in `pretty-1.1.3.6:Text.PrettyPrint.HughesPJ')
|
112 | displayDefaultTree orig = loop tr <> ";"
| ^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:120:27: error:
Ambiguous occurrence `<>'
It could refer to either `Prelude.<>',
imported from
`Prelude' at Bio/Phylogeny/PhyBin/CoreTypes.hs:7:8-37
(and
originally defined in `GHC.Base')
or
`Text.PrettyPrint.HughesPJClass.<>',
imported from
`Text.PrettyPrint.HughesPJClass' at Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1-58
(and
originally defined in `pretty-1.1.3.6:Text.PrettyPrint.HughesPJ')
|
120 | Just val -> base <> text ":[" <> text (show val) <> text
"]"
| ^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:120:40: error:
Ambiguous occurrence `<>'
It could refer to either `Prelude.<>',
imported from
`Prelude' at Bio/Phylogeny/PhyBin/CoreTypes.hs:7:8-37
(and
originally defined in `GHC.Base')
or
`Text.PrettyPrint.HughesPJClass.<>',
imported from
`Text.PrettyPrint.HughesPJClass' at Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1-58
(and
originally defined in `pretty-1.1.3.6:Text.PrettyPrint.HughesPJ')
|
120 | Just val -> base <> text ":[" <> text (show val) <> text
"]"
| ^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:120:59: error:
Ambiguous occurrence `<>'
It could refer to either `Prelude.<>',
imported from
`Prelude' at Bio/Phylogeny/PhyBin/CoreTypes.hs:7:8-37
(and
originally defined in `GHC.Base')
or
`Text.PrettyPrint.HughesPJClass.<>',
imported from
`Text.PrettyPrint.HughesPJClass' at Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1-58
(and
originally defined in `pretty-1.1.3.6:Text.PrettyPrint.HughesPJ')
|
120 | Just val -> base <> text ":[" <> text (show val) <> text
"]"
| ^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:121:47: error:
Ambiguous occurrence `<>'
It could refer to either `Prelude.<>',
imported from
`Prelude' at Bio/Phylogeny/PhyBin/CoreTypes.hs:7:8-37
(and
originally defined in `GHC.Base')
or
`Text.PrettyPrint.HughesPJClass.<>',
imported from
`Text.PrettyPrint.HughesPJClass' at Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1-58
(and
originally defined in `pretty-1.1.3.6:Text.PrettyPrint.HughesPJ')
|
121 | where base = parens$ sep$ map_but_last (<>text",") $ map
loop ls
| ^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:126:36: error:
Ambiguous occurrence `<>'
It could refer to either `Prelude.<>',
imported from
`Prelude' at Bio/Phylogeny/PhyBin/CoreTypes.hs:7:8-37
(and
originally defined in `GHC.Base')
or
`Text.PrettyPrint.HughesPJClass.<>',
imported from
`Text.PrettyPrint.HughesPJClass' at Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1-58
(and
originally defined in `pretty-1.1.3.6:Text.PrettyPrint.HughesPJ')
|
126 | displayStrippedTree orig = loop tr <> ";"
| ^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:130:57: error:
Ambiguous occurrence `<>'
It could refer to either `Prelude.<>',
imported from
`Prelude' at Bio/Phylogeny/PhyBin/CoreTypes.hs:7:8-37
(and
originally defined in `GHC.Base')
or
`Text.PrettyPrint.HughesPJClass.<>',
imported from
`Text.PrettyPrint.HughesPJClass' at Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1-58
(and
originally defined in `pretty-1.1.3.6:Text.PrettyPrint.HughesPJ')
|
130 | loop (NTInterior _ ls) = parens$ sep$ map_but_last
(<>text",") $ map loop ls
| ^^
make: *** [/usr/share/cdbs/1/class/hlibrary.mk:147: build-ghc-stamp]
Error 1
--
Ilias
--- End Message ---
--- Begin Message ---
Source: phybin
Source-Version: 0.3-3
We believe that the bug you reported is fixed in the latest version of
phybin, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 916...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated phybin package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 19 Dec 2018 21:52:54 +0100
Source: phybin
Binary: phybin
Architecture: source
Version: 0.3-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
phybin - binning/clustering newick trees by topology
Closes: 916800
Changes:
phybin (0.3-3) unstable; urgency=medium
.
* Add hint to Github in watch file
* Add patch to build with ghc-8.6 (Thanks to Joachim Breitner
<nome...@debian.org>)
Closes: #916800
* Standards-Version: 4.2.1
* Secure URI in copyright format
Checksums-Sha1:
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2588f8dd6ec542a3a39b9f82172f387176b9a114 7814 phybin_0.3-3_amd64.buildinfo
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phybin_0.3-3_amd64.buildinfo
Files:
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141919731bef8573c8332b89549493bb 6164 science optional
phybin_0.3-3.debian.tar.xz
250d650e35ede5ea6b3fa8e134d1e863 7814 science optional
phybin_0.3-3_amd64.buildinfo
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