Your message dated Thu, 13 Dec 2018 19:05:56 +0000 with message-id <e1gxwj2-000gp8...@fasolo.debian.org> and subject line Bug#909767: fixed in salmon 0.12.0+ds1-1 has caused the Debian Bug report #909767, regarding salmon FTBFS with spdlog 1:1.1.0-1 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 909767: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=909767 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: salmon Version: 0.7.2+ds1-3 Severity: serious Tags: ftbfs https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/salmon.html ... In file included from /build/1st/salmon-0.7.2+ds1/include/HitManager.hpp:4, from /build/1st/salmon-0.7.2+ds1/src/HitManager.cpp:1: /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp: In function 'void rapmap::utils::writeSAMHeader(IndexT&, std::shared_ptr<spdlog::logger>)': /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:52:18: error: 'MemoryWriter' is not a member of 'fmt' fmt::MemoryWriter hd; ^~~~~~~~~~~~ /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:53:6: error: 'hd' was not declared in this scope hd.write("@HD\tVN:1.0\tSO:unknown\n"); ^~ /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp: In function 'void rapmap::utils::writeSAMHeader(IndexT&, std::ostream&)': /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:72:18: error: 'MemoryWriter' is not a member of 'fmt' fmt::MemoryWriter hd; ^~~~~~~~~~~~ /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:73:6: error: 'hd' was not declared in this scope hd.write("@HD\tVN:1.0\tSO:unknown\n"); ^~ /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp: At global scope: /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:91:43: error: expected template-name before '<' token class FixedBuffer : public fmt::Buffer<char> { ^ /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:91:43: error: expected '{' before '<' token /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:91:43: error: expected unqualified-id before '<' token /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:102:44: error: expected class-name before '{' token class FixedWriter : public fmt::Writer { ^ /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:104:25: error: field 'buffer_' has incomplete type 'rapmap::utils::FixedBuffer' FixedBuffer buffer_; ^~~~~~~ /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:91:11: note: forward declaration of 'class rapmap::utils::FixedBuffer' class FixedBuffer : public fmt::Buffer<char> { ^~~~~~~~~~~ /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp: In constructor 'rapmap::utils::FixedWriter::FixedWriter(char*, std::size_t)': /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:107:30: error: expected class-name before '(' token : fmt::Writer(buffer_), buffer_(array, size) {} ^ /build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:107:30: error: expected '{' before '(' token ...
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--- Begin Message ---Source: salmon Source-Version: 0.12.0+ds1-1 We believe that the bug you reported is fixed in the latest version of salmon, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 909...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated salmon package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 13 Dec 2018 18:21:38 +0100 Source: salmon Binary: salmon Architecture: source Version: 0.12.0+ds1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: salmon - wicked-fast transcript quantification from RNA-seq data Closes: 909767 Changes: salmon (0.12.0+ds1-1) unstable; urgency=medium . * Team upload. * New upstream version Closes: #909767 * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Remove debian/gbp.conf * Build-Depends: libbz2-dev, liblzma-dev * Use python3-sphinx exclusively * Do not parse d/changelog Checksums-Sha1: 43b6f913d6f505455e2c57597e03ac285eb0ba27 2506 salmon_0.12.0+ds1-1.dsc a78a9d85908853eff813c1f4a1eaa33e3f678db1 6551816 salmon_0.12.0+ds1.orig.tar.xz 7147ca23586050dcddc621d35187d9135b17e807 8872 salmon_0.12.0+ds1-1.debian.tar.xz 50fdc9c0ec5486da0ffea2de7d635791e097f3c2 10254 salmon_0.12.0+ds1-1_amd64.buildinfo Checksums-Sha256: 4e48c2a9f122d21cf6c089575c554f3f28cda81daabc35f329333bee0e64b6e2 2506 salmon_0.12.0+ds1-1.dsc 79c1eb664567ff63416364f63832b075e3dc2939bdcd1a20f4725f224eb4324c 6551816 salmon_0.12.0+ds1.orig.tar.xz 402582021e594e9f7b21f7b699918df6d6ffb6f8c7d1aafaa0ae4f8e390dd4c1 8872 salmon_0.12.0+ds1-1.debian.tar.xz 29d05a02f23f679b61d7b3fa6dfcad66f9cc869d0f9ced496cd1e88c980e6413 10254 salmon_0.12.0+ds1-1_amd64.buildinfo Files: 099d2ae92e055b0c5874e33a624ee209 2506 science optional salmon_0.12.0+ds1-1.dsc 1cedbf2dfe6c8a4285ed9135e72a78ba 6551816 science optional salmon_0.12.0+ds1.orig.tar.xz d46b4c07b9305f8550421fc46e21d04e 8872 science optional salmon_0.12.0+ds1-1.debian.tar.xz a1a617c43bbc10c2ee16a9320a7f63b2 10254 science optional salmon_0.12.0+ds1-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlwSqLQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEL8Q/+IR/W84uWnXZcbNqb4bTf3Dpie6A+YlCZ TWeltViWpDLuVQMfiC1vdZSr20x/uxiNr3++yK1VwqrEgA6Xm/H+8x9Bh6RRZgbF 6QA6Qppa4madJN54ud4FtxFZQHogXB0pwrCZzW+UBtjxlA1Dau0H0MiaJkusPRsb uZS7Ma0Siwzki21X4FpI8BZD7Iwq5GAxJvSEf1sXI0Xl28UdqVfVgdFQLpuztBNE 9bB851t//0wGmlX/9oNb+xDb74UbUHKZyhDmpOC9XX67ggmUSB48sOpLXvtHv3jy WHhOES13S+Ar6+sLTs/VqaYKdkw974tZ6dqriA4h9ZcKOw3ixH7AqgPdQGG+yFPx Sw+xQ345fT03VtIx/WeNxiWcoUWtviArpdpXrEhTzgxS0PCLgZggrW2Pzu/0Nw4L gOrZVsIOnb+didks7qwDfZzNW0r8hSGo02Bio7BFoSyPvmaFKhMUrz9Tjvv9++d5 aEf99sEbJ1HSYP+dtvFXOS6tbxn/Cmun3Icq46MhpcQYVxYGFtp4YLWuncpzc8cZ 7NC64pYOoHYYoivil57KYWbQZgSnUXxsDZICXEEmg68udQJYB0qOEbGtygu9KcHi vd5dstZ5wKcqAmRzWbyFaAKCYNnVNrD9NgZERXK0k80ylN4Gmq4d54M/1Xu+npeC mYMzeRD1Jsg= =KEcx -----END PGP SIGNATURE-----
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