Your message dated Thu, 13 Dec 2018 03:49:33 +0000
with message-id <e1gxi0d-000ftt...@fasolo.debian.org>
and subject line Bug#916000: fixed in ncbi-blast+ 2.7.1-2
has caused the Debian Bug report #916000,
regarding ncbi-blast+: FTBFS - Makefile.flat: No such file or directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
916000: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=916000
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: ncbi-blast+
Version: 2.7.1-1
Severity: serious
Justification: fails to build from source
Hello,
ncbi-blast+ FTBFS on current sid:
LIBRARIES: build as dynamic by default
FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux
PACKAGES:
enabled: Iconv Z BZ2 PCRE MBEDTLS GMP GMP NETTLE NETTLE GNUTLS Boost.Spirit
Boost.Test.Included LMDB LocalLMDB
disabled: UUID FUSE LIBUNWIND LocalZ LocalBZ2 LZO LocalPCRE GCRYPT OPENSSL
KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON
PYTHON25 PYTHON26 PYTHON27 PYTHON3 PERL Boost.Filesystem Boost.Iostreams
Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Thread
C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2
SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT
LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5
JPEG PNG TIFF GIF UNGIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO Cereal SASL2
MONGODB MONGODB3 GMOCK LAPACK LIBUV LIBSSH2 CASSANDRA LIBXLSXWRITER GRPC
PROJECTS:
enabled: cgi serial objects app algo
disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench
Tools / flags / paths:
/tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.mk
Configuration header:
/tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/inc/ncbiconf_unix.h
To build everything: cd /tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/build &&
/usr/bin/make all_r
or simply run /usr/bin/make in the current directory
******* CONFIGURATION SUCCESSFUL *******
make[1]: Leaving directory '/tmp/MODGNU/ncbi-blast+-2.7.1'
debian/rules override_dh_auto_build-arch
make[1]: Entering directory '/tmp/MODGNU/ncbi-blast+-2.7.1'
cd c++/BUILD/build && \
make -j5 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/
objtools/align_format/ objtools/blast/"
make[2]: Entering directory '/tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/build'
make[2]: warning: -j5 forced in submake: resetting jobserver mode.
make[2]: Makefile.flat: No such file or directory
make[2]: *** No rule to make target 'Makefile.flat'. Stop.
make[2]: Leaving directory '/tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/build'
make[1]: *** [debian/rules:56: override_dh_auto_build-arch] Error 2
make[1]: Leaving directory '/tmp/MODGNU/ncbi-blast+-2.7.1'
make: *** [debian/rules:129: build-arch] Error 2
--- End Message ---
--- Begin Message ---
Source: ncbi-blast+
Source-Version: 2.7.1-2
We believe that the bug you reported is fixed in the latest version of
ncbi-blast+, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 916...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Aaron M. Ucko <u...@debian.org> (supplier of updated ncbi-blast+ package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 12 Dec 2018 22:24:45 -0500
Source: ncbi-blast+
Binary: ncbi-blast+ ncbi-blast+-legacy blast2
Architecture: source
Version: 2.7.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Aaron M. Ucko <u...@debian.org>
Description:
blast2 - transitional dummy package to ncbi-blast+-legacy
ncbi-blast+ - next generation suite of BLAST sequence search tools
ncbi-blast+-legacy - NCBI Blast legacy call script
Closes: 916000
Changes:
ncbi-blast+ (2.7.1-2) unstable; urgency=medium
.
[ David Miguel Susano Pinto ]
* d/control: fix Vcs-* links to point to salsa
.
[ Aaron M. Ucko ]
* d/control: Standards-Version: 4.2.1 (already compliant).
* d/patches/support_boost_1_67: New patch to extend Boost support
(used for uninstalled tests) through at least version 1.67, per
upstream (https://www.ncbi.nlm.nih.gov/viewvc/v1/trunk/c%2B%2B)
revisions 79910, 79926, 79928, and 79929. (Closes: #916000.)
Checksums-Sha1:
d2796c5240a12bc008adee757cc237ea543235d4 2304 ncbi-blast+_2.7.1-2.dsc
c0d91a46be5c5987757472a79471f71928e31c2c 29428
ncbi-blast+_2.7.1-2.debian.tar.xz
d004ba887717b145db1cb8d2a4345c690a88c464 9707
ncbi-blast+_2.7.1-2_source.buildinfo
Checksums-Sha256:
88fa99677a85dbe8ed5634e980e72750b6f8004dbb4fe0f06344db2e64de8a87 2304
ncbi-blast+_2.7.1-2.dsc
392414e70e0c4e0387bf1764547fa1ea04862a95f76cc3f7123b75d786fef17c 29428
ncbi-blast+_2.7.1-2.debian.tar.xz
8757333b882051d019259b8f4de8f68753471d75ab0533ac0b34814ac35a4a67 9707
ncbi-blast+_2.7.1-2_source.buildinfo
Files:
07be042c004fe9d9361540975d49b455 2304 science optional ncbi-blast+_2.7.1-2.dsc
a609aafb8576d31f67377a06b59a6e37 29428 science optional
ncbi-blast+_2.7.1-2.debian.tar.xz
b7735c9e8c282c2f65bd804578432d3d 9707 science optional
ncbi-blast+_2.7.1-2_source.buildinfo
-----BEGIN PGP SIGNATURE-----
iQIzBAEBCAAdFiEEfDq5z9IwvTDdAJxZHnCRsfFKZKIFAlwR0bEACgkQHnCRsfFK
ZKJngA//WFKEE+kFT3lLFL1uhcZQgGnrRfLkwzka+p+lsznMU2svYEzgpw36kPfd
ZIw8xTeqCbVgtoED+p4ZEgb5/k+2n/W+heutpQJtDUQFPtyBYNaVc/bQMV32mJ+K
rGPBdww9fbRf/fvghiGv7kS5RPElPmvvn4enzWuay+6tEJTMrkqeuwrHsy8ZFGh7
M4hqStUyC9deFlTk39hJRy7Iai6JK4x6Elkls8wU+aJ/Ey3PkClzXSivMI6+kR6n
3fDQ0iR0fRAR6RIRVhMaHcnUkHWdSfRIYlCoBxn5J1h7smb7OWPNXT4XarT2xKMr
FrPrzHhpU+eHkT+28suI8YhM6SmE0kKbmC3lJdT0BmeKQoNk+py0Y0K7cLwOtVuc
XzOoBrqINwvpkpfcTiTJB7SRlCMruz+fpXkriRQTy1rBxd3lvs8/hUp6+bv6Sa0m
8xbmYbAYLueWQz967AxJlhDTr+TxuRigZBK97wYpcygwDiR5odjK3IZl9AEvt1Rv
ZyBhGpmVNn02B15xfx+5zocIQxH+pZ1+MMSieZUGuLn4AjCswvgq66trSUVURqFO
7sm/z49VQNMjFmqKAoXgSlWEvw3l+pWok2SolIN0gme5yKHYO9I5VqvA28wSLx5M
VVELwR4kkMeQVqEUynnhLmZpfwsYtQWJDY1x+fyNfX4EKt2AaMk=
=KmIi
-----END PGP SIGNATURE-----
--- End Message ---
