Your message dated Tue, 04 Dec 2018 08:56:19 +0000 with message-id <e1gu6v9-000j7h...@fasolo.debian.org> and subject line Bug#914687: fixed in lagan 2.0-3 has caused the Debian Bug report #914687, regarding lagan: /usr/bin/chaos is already provided by emboss to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 914687: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=914687 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: lagan Version: 2.0-2 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'sid' to 'experimental'. It installed fine in 'sid', then the upgrade to 'experimental' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at https://www.debian.org/doc/debian-policy/ch-relationships.html#overwriting-files-and-replacing-packages-replaces >From the attached log (scroll to the bottom...): Preparing to unpack .../archives/lagan_2.0-2_amd64.deb ... Unpacking lagan (2.0-2) ... dpkg: error processing archive /var/cache/apt/archives/lagan_2.0-2_amd64.deb (--unpack): trying to overwrite '/usr/bin/chaos', which is also in package emboss 6.6.0+dfsg-7 dpkg-deb: error: paste subprocess was killed by signal (Broken pipe) Errors were encountered while processing: /var/cache/apt/archives/lagan_2.0-2_amd64.deb cheers, Andreas
emboss=6.6.0+dfsg-7_lagan=2.0-2.log.gz
Description: application/gzip
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--- Begin Message ---Source: lagan Source-Version: 2.0-3 We believe that the bug you reported is fixed in the latest version of lagan, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 914...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated lagan package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 04 Dec 2018 08:36:52 +0100 Source: lagan Binary: lagan Architecture: source Version: 2.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: lagan - highly parametrizable pairwise global genome sequence aligner Closes: 914687 Changes: lagan (2.0-3) unstable; urgency=medium . * Upload to unstable * debhelper 11 * Drop useless get-orig-source target * Remove trailing whitespace in debian/changelog * Move /usr/bin/chaos to /usr/lib/lagan/bin Closes: #914687 * debian/README.Debian: Document move of /usr/bin/chaos * Propagate hardening and debug options Checksums-Sha1: 5b44357fd6c64bd69c3557b719991b464160f4b8 1949 lagan_2.0-3.dsc 48168a334ab62c24f1dbd713f1be8e3b009137a5 6828 lagan_2.0-3.debian.tar.xz Checksums-Sha256: 46be4961b93198fa225ddf3c3b79a51e3723463b40394a2910fdcd4a7714bf3c 1949 lagan_2.0-3.dsc 92bbecd2018d7117796dea2beb96044614c93a82117ea9770d46410570a2ce13 6828 lagan_2.0-3.debian.tar.xz Files: ecb59de43ec3d1e2c1617eaac4af83d9 1949 science optional lagan_2.0-3.dsc 0621464cbc52e93c9aa8a3b73ba74a1d 6828 science optional lagan_2.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlwGONoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHBOw/9EsdYqTTSFYje4+tTWepeJ+bXixamUWk0 yGpVL6yd1pevYAN12wzIYI4koNrXzRnas3WNQvjYhr4W879unBaIojUW1Aua0AgQ hsIVEGLzy/0rUGGi7RskwF/ODEa5OgqyUL23aRWmgMmU5+JN5/vGTYvxmamO70pS QZj4bJbhhQnmA7b8EJEzl8J2OxUnQVq9IekZyr5/jvYIIeMr4MRQfgZCADQB1O8n HXkETCumJY8+OzyXFbI7zENiuCjgqf42DHeTx2SdKwMV7CX6A/1RJ6ASmRdppBc8 a3SnZdi3efej8uI4m5ttSAKi6VyEuX50PLzhnruU2Qd/AFsgYTWn26wJShhb88CV y4wv3nQJXbTqaQjz7vFDJ7FSvg/XBnhS2mW8JBiCTr7TZEoY2ArfoqM1UwkaUXjU udncKPXjsDoJAFzLWmAoyth9ct78PUTZtrE3DOkaLZNHx6wDhHZWCsVp6Skr7gDy y521pzxKGagdIzSVdG+92lZCp5qOEC9gdYDPr0uaikQu2uSavNmyZLTzo8q63tZE pu43C3vmWr7z7KEiaHp4pRkQJ4nOM3eqBnZLXFxLklei8fDL/tDkGP6Xa78pG/It zLMGESTkWm+XYLh/5oJpXxO/VnIKApc4cXaCDt5ZElI8hzmXHzyIpjcfxiFRfb3/ ZmL7Sp07+98= =uXCl -----END PGP SIGNATURE-----
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