Your message dated Fri, 19 Oct 2018 06:35:00 +0000
with message-id <e1gdona-000bkq...@fasolo.debian.org>
and subject line Bug#905386: fixed in libedlib 1.2.3-2
has caused the Debian Bug report #905386,
regarding libedlib: FTBFS in sid
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
905386: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=905386
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:libedlib
Version: 1.2.3-1
Severity: serious
Tags: ftbfs
Hello Andreas.
I tried to build this package in sid but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release
cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None
-DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
-DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
"-GUnix Makefiles" -DCMAKE_BUILD_TYPE=Release ..
-- The CXX compiler identification is GNU 8.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
[... snipped ...]
file-rename 's/_static\.a/.a/' `find debian -name libedlib_static.a`
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libedlib-dev/usr/lib/x86_64-linux-gnu
install -d -m 755 debian/libedlib0/usr/lib/x86_64-linux-gnu
mv debian/tmp/usr/lib/libedlib.a debian/libedlib-dev/usr/lib/x86_64-linux-gnu
mv debian/tmp/usr/lib/libedlib.so debian/libedlib-dev/usr/lib/x86_64-linux-gnu
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/libedlib.so.0
debian/libedlib0/usr/lib/x86_64-linux-gnu
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/libedlib.so.1.2.3
debian/libedlib0/usr/lib/x86_64-linux-gnu
PKGDEV=libedlib-dev
PKGSHL=libedlib0
install -d -m 755 debian/libedlib-dev/usr/include
mv debian/tmp/usr/include/edlib.h debian/libedlib-dev/usr/include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see
diff output below
dpkg-gensymbols: warning: some symbols or patterns disappeared in the symbols
file: see diff output below
dpkg-gensymbols: warning: debian/libedlib0/DEBIAN/symbols doesn't match
completely debian/libedlib0.symbols
--- debian/libedlib0.symbols (libedlib0_1.2.3-1_amd64)
+++ dpkg-gensymbolsd4Wcuf 2018-08-03 21:20:30.459354753 +0000
@@ -2,7 +2,8 @@
_ZN18EqualityDefinitionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPK17EdlibEqualityPairi@Base
1.2.3
_ZN18EqualityDefinitionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPK17EdlibEqualityPairi@Base
1.2.3
_ZNSt6vectorIcSaIcEE12emplace_backIJcEEEvDpOT_@Base 1.2.3
- _ZNSt6vectorIiSaIiEE12emplace_backIJiEEEvDpOT_@Base 1.2.3
+#MISSING: 1.2.3-1# _ZNSt6vectorIiSaIiEE12emplace_backIJiEEEvDpOT_@Base 1.2.3
+
_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base
1.2.3-1
edlibAlign@Base 1.2.3
edlibAlignmentToCigar@Base 1.2.3
edlibDefaultAlignConfig@Base 1.2.3
dh_makeshlibs: failing due to earlier errors
make: *** [debian/rules:10: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned
exit status 2
--------------------------------------------------------------------------------
The build was made with "dpkg-buildpackage -B" in my autobuilder,
but it also fails here:
https://buildd.debian.org/status/package.php?p=libedlib
Thanks.
--- End Message ---
--- Begin Message ---
Source: libedlib
Source-Version: 1.2.3-2
We believe that the bug you reported is fixed in the latest version of
libedlib, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 905...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated libedlib package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 19 Oct 2018 08:15:14 +0200
Source: libedlib
Binary: libedlib0 libedlib-dev edlib-aligner
Architecture: source
Version: 1.2.3-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
edlib-aligner - edlib sequence alignment tool using edit distance
libedlib-dev - library for sequence alignment using edit distance (devel)
libedlib0 - library for sequence alignment using edit distance
Closes: 905386
Changes:
libedlib (1.2.3-2) unstable; urgency=medium
.
* Fix symbols file
Closes: #905386
* Standards-Version: 4.2.1
* Run build time tests
* Add autopkgtest
Checksums-Sha1:
354e18e29db5cb97e60d2c64d32923cb46036c50 2108 libedlib_1.2.3-2.dsc
5da988fb72d3146441a804077a1ae204c1a20337 4912 libedlib_1.2.3-2.debian.tar.xz
Checksums-Sha256:
f5ab8ab7846e0b4f5d304e13dfa62fddc4fd168c878af297bdc83613942e3617 2108
libedlib_1.2.3-2.dsc
c41d476087a0684e06ab7fb15a42dbd0d9fbaea61b4666d3a4ce622ce99f9dc0 4912
libedlib_1.2.3-2.debian.tar.xz
Files:
85b62441a49743e74060f5e683d8caae 2108 science optional libedlib_1.2.3-2.dsc
6b67fb444898d47054c862ed981a9bdc 4912 science optional
libedlib_1.2.3-2.debian.tar.xz
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--- End Message ---
