Your message dated Wed, 03 Oct 2018 21:42:23 +0000
with message-id <e1g7ouv-000a0h...@fasolo.debian.org>
and subject line Bug#910206: fixed in pbbam 0.18.0+dfsg-2
has caused the Debian Bug report #910206,
regarding libpbbam-dev: missing Breaks+Replaces: libpbbam (<< 0.18)
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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immediately.)


-- 
910206: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=910206
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libpbbam-dev
Version: 0.18.0+dfsg-1
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts

Hi,

during a test with piuparts I noticed your package fails to upgrade from
'testing'.
It installed fine in 'testing', then the upgrade to 'sid' fails
because it tries to overwrite other packages files without declaring a
Breaks+Replaces relation.

See policy 7.6 at
https://www.debian.org/doc/debian-policy/ch-relationships.html#overwriting-files-and-replacing-packages-replaces

>From the attached log (scroll to the bottom...):

  Preparing to unpack .../8-libpbbam-dev_0.18.0+dfsg-1_amd64.deb ...
  Unpacking libpbbam-dev (0.18.0+dfsg-1) over (0.7.4+ds-1+b1) ...
  dpkg: error processing archive 
/tmp/apt-dpkg-install-IoLOpc/8-libpbbam-dev_0.18.0+dfsg-1_amd64.deb (--unpack):
   trying to overwrite '/usr/lib/x86_64-linux-gnu/libpbbam.so', which is also 
in package libpbbam:amd64 0.7.4+ds-1+b1
  Errors were encountered while processing:
   /tmp/apt-dpkg-install-IoLOpc/8-libpbbam-dev_0.18.0+dfsg-1_amd64.deb


cheers,

Andreas

Attachment: libpbbam-dev_0.18.0+dfsg-1.log.gz
Description: application/gzip


--- End Message ---
--- Begin Message ---
Source: pbbam
Source-Version: 0.18.0+dfsg-2

We believe that the bug you reported is fixed in the latest version of
pbbam, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 910...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated pbbam package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Wed, 03 Oct 2018 22:24:56 +0200
Source: pbbam
Binary: pbbamtools libpbbam0.18.0 libpbbam-dev
Architecture: source
Version: 0.18.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 libpbbam-dev - Pacific Biosciences binary alignment/map (BAM) library (headers)
 libpbbam0.18.0 - Pacific Biosciences binary alignment/map (BAM) library
 pbbamtools - processing Pacific Biosciences binary alignment/map files
Closes: 910206
Changes:
 pbbam (0.18.0+dfsg-2) unstable; urgency=medium
 .
   * Team upload.
   * Missing Breaks+Replaces: libpbbam (<< 0.18)
     Closes: #910206
   * No needs-recommends restrictions, just Test-Depends: samtools
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 431bac00e17ec1fb8b5019f5648f12e226d446d6 6944 pbbam_0.18.0+dfsg-2.debian.tar.xz
Checksums-Sha256:
 39fe56701d0a0b5168d38bc8a2f4d07775a614ca39d3b860e17c278ac409e48b 2308 
pbbam_0.18.0+dfsg-2.dsc
 31fa0d48262b9a0045e63ba87322bdce223e8dc6db47b8c6b2452ec6971c970b 6944 
pbbam_0.18.0+dfsg-2.debian.tar.xz
Files:
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 085f653157e471237a4e6dcf5dec8431 6944 science optional 
pbbam_0.18.0+dfsg-2.debian.tar.xz

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--- End Message ---

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