Control: tags -1 help
On Thu, Sep 27, 2018 at 11:38:55PM +0300, Adrian Bunk wrote:
> Source: rapmap
> Version: 0.5.0+dfsg-3
> Severity: serious
> Tags: ftbfs
>
> https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/rapmap.html
>
> ...
> In file included from /build/1st/rapmap-0.5.0+dfsg/src/RapMapUtils.cpp:26:
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp: In function 'void
> rapmap::utils::writeSAMHeader(IndexT&, std::shared_ptr<spdlog::logger>)':
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:86:18: error:
> 'MemoryWriter' is not a member of 'fmt'
> fmt::MemoryWriter hd;
> ^~~~~~~~~~~~
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:87:6: error: 'hd' was
> not declared in this scope
> hd.write("@HD\tVN:1.0\tSO:unknown\n");
> ^~
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp: In function 'void
> rapmap::utils::writeSAMHeader(IndexT&, std::ostream&)':
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:106:18: error:
> 'MemoryWriter' is not a member of 'fmt'
> fmt::MemoryWriter hd;
> ^~~~~~~~~~~~
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:107:6: error: 'hd' was
> not declared in this scope
> hd.write("@HD\tVN:1.0\tSO:unknown\n");
> ^~
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp: At global scope:
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:125:43: error: expected
> template-name before '<' token
> class FixedBuffer : public fmt::Buffer<char> {
> ^
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:125:43: error: expected
> '{' before '<' token
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:125:43: error: expected
> unqualified-id before '<' token
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:136:44: error: expected
> class-name before '{' token
> class FixedWriter : public fmt::Writer {
> ^
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:138:25: error: field
> 'buffer_' has incomplete type 'rapmap::utils::FixedBuffer'
> FixedBuffer buffer_;
> ^~~~~~~
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:125:11: note: forward
> declaration of 'class rapmap::utils::FixedBuffer'
> class FixedBuffer : public fmt::Buffer<char> {
> ^~~~~~~~~~~
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp: In constructor
> 'rapmap::utils::FixedWriter::FixedWriter(char*, std::size_t)':
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:141:30: error: expected
> class-name before '(' token
> : fmt::Writer(buffer_), buffer_(array, size) {}
> ^
> /build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:141:30: error: expected
> '{' before '(' token
> ...
I admit my limited knowledge in C++ does not enable me to see a
conncetion between the update of spdlog and these errors but a test
build with libspdlog from testing passed flawlessly. However, later in
the log there are also
...
In file included from /usr/include/c++/8/memory:81,
from /usr/include/c++/8/thread:39,
from /build/rapmap-0.5.0+x/src/RapMapSAMapper.cpp:33:
/usr/include/c++/8/bits/shared_ptr.h:719:5: note: candidate: 'template<class
_Tp, class ... _Args> std::shared_ptr<_Tp> std::make_shared(_Args&& ...)'
make_shared(_Args&&... __args)
^~~~~~~~~~~
/usr/include/c++/8/bits/shared_ptr.h:719:5: note: template argument
deduction/substitution failed:
/build/rapmap-0.5.0+x/src/RapMapSAMapper.cpp:588:80: error: template argument 1
is invalid
auto consoleSink =
std::make_shared<spdlog::sinks::ansicolor_stderr_sink_mt>();
^
/build/rapmap-0.5.0+x/src/RapMapSAMapper.cpp:589:62: error: no matching
function for call to 'create(const char [10], <brace-enclosed initializer
list>)'
auto consoleLog = spdlog::create("stderrLog", {consoleSink});
^
which are looking similar to the problem in #909763 (thus I again took
the freedom to set Gert in CC).
I see another option to work around the current issue since rapmap comes
with its own copy of spdlog (in latest Git version 0.16.3). I could
revert the exclusion from the rapmap source code as long as upstream has
not yet switched to spdlog 1.1. (and ask in an issue for the migration).
Kind regards
Andreas.
--
http://fam-tille.de
