Your message dated Mon, 10 Sep 2018 14:41:56 +0000 with message-id <e1fzno0-000a9d...@fasolo.debian.org> and subject line Bug#908459: fixed in theseus 3.3.0-7 has caused the Debian Bug report #908459, regarding theseus FTBFS with gcc 8 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 908459: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=908459 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: theseus Version: 3.3.0-6 Severity: serious Tags: ftbfs https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/theseus.html ... /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -pthread -c DLTutils.c DLTutils.c: In function 'mystrncpy': DLTutils.c:159:5: error: 'strncpy' specified bound depends on the length of the source argument [-Werror=stringop-overflow=] strncpy(s1, s2, len); ^~~~~~~~~~~~~~~~~~~~ DLTutils.c:156:26: note: length computed here size_t len = strlen(s2); /* minimum allocated length of s2 */ ^~~~~~~~~~ DLTutils.c: In function 'mystrcpy': DLTutils.c:173:5: error: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Werror=stringop-truncation] strncpy(s1, s2, len); ^~~~~~~~~~~~~~~~~~~~ DLTutils.c:171:27: note: length computed here size_t len = strlen(s2); ^~~~~~~~~~ In function 'mystrcpy', inlined from 'mystrcat' at DLTutils.c:187:5: DLTutils.c:173:5: error: 'strncpy' specified bound depends on the length of the source argument [-Werror=stringop-overflow=] strncpy(s1, s2, len); ^~~~~~~~~~~~~~~~~~~~ DLTutils.c: In function 'mystrcat': DLTutils.c:171:27: note: length computed here size_t len = strlen(s2); ^~~~~~~~~~ In function 'mystrcpy', inlined from 'GetUniqFileNameNum' at DLTutils.c:323:5: DLTutils.c:173:5: error: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Werror=stringop-truncation] strncpy(s1, s2, len); ^~~~~~~~~~~~~~~~~~~~ DLTutils.c: In function 'GetUniqFileNameNum': DLTutils.c:171:27: note: length computed here size_t len = strlen(s2); ^~~~~~~~~~ In function 'mystrcpy', inlined from 'GetUniqFileNameNum' at DLTutils.c:323:5, inlined from 'myfopen' at DLTutils.c:342:5: DLTutils.c:173:5: error: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Werror=stringop-truncation] strncpy(s1, s2, len); ^~~~~~~~~~~~~~~~~~~~ DLTutils.c: In function 'myfopen': DLTutils.c:171:27: note: length computed here size_t len = strlen(s2); ^~~~~~~~~~ In function 'mystrncpy', inlined from 'getroot' at DLTutils.c:560:5: DLTutils.c:159:5: error: 'strncpy' specified bound depends on the length of the source argument [-Werror=stringop-overflow=] strncpy(s1, s2, len); ^~~~~~~~~~~~~~~~~~~~ DLTutils.c: In function 'getroot': DLTutils.c:556:30: note: length computed here int length = strlen(filename); ^~~~~~~~~~~~~~~~ cc1: all warnings being treated as errors make[3]: *** [Makefile:10: DLTutils.o] Error 1
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--- Begin Message ---Source: theseus Source-Version: 3.3.0-7 We believe that the bug you reported is fixed in the latest version of theseus, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 908...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Fabian Kloetzl <kloe...@evolbio.mpg.de> (supplier of updated theseus package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 10 Sep 2018 09:56:01 +0000 Source: theseus Binary: theseus theseus-examples Architecture: source Version: 3.3.0-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Fabian Kloetzl <kloe...@evolbio.mpg.de> Description: theseus - superimpose macromolecules using maximum likelihood theseus-examples - superimpose macromolecules using maximum likelihood (examples) Closes: 908459 Changes: theseus (3.3.0-7) unstable; urgency=medium . [ Fabian Kloetzl ] * Team upload. * Fix string bugs uncovered by gcc8 Closes: #908459 . [ Andreas Tille ] * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 Checksums-Sha1: a996d2322cb4fd3db0c0942f8b6910b4cf673615 2020 theseus_3.3.0-7.dsc 5cbec3c9bbb2c552810f6a2efc5ac2fcb5978d2e 14908 theseus_3.3.0-7.debian.tar.xz Checksums-Sha256: 274628cdab0035bcdedf95983b236fc2789606621b4b579777c7587cd7b5c47e 2020 theseus_3.3.0-7.dsc e3814ca679c852494a26fd695933a91e57db8ba6c24f712a7cfc2b37a9da7049 14908 theseus_3.3.0-7.debian.tar.xz Files: af59072da030e9ae8d99deec37381911 2020 science optional theseus_3.3.0-7.dsc e6619bacff445ed5f721baa84c946d76 14908 science optional theseus_3.3.0-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAluWdjEOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtHF5g/7BOzFSMwJeMjrpD4PL0QnLyrGAjNaZ1z2IaDb 1S9wnOKhoULsrD9LYdH/k79o2E9knkFSlFhbLARh+ce/rzhN/Vx7T2ib577iTlm2 neVXd/UIzJsvdZUiNiP4UbdDoIRm+ZW8ZfyKI+J0YP7azPSLowOSkcwOSNM3LzjX dMy1BDIVZb/oouC8FyUzBTR3jez/exeWoNOB4i8WAoKggEppl6dUMM/osuRSG0KX YwBRB/TCTP5CX8bFwZg7Ng71AU73wqcx1i36fMvAhz49Aa5esa1IdihW5Oxwpz6O 4pcguLvVMcgfN1iGUdSWdDhuKFYQfnyLordtepPRz1JsDYvFHYqMfErcqi4LPf45 Z/SkBkORenuzujEUWQqRwFjYu8t6Xihb5A/GdDHcPZ1IW3fEyvTfPSmTynEeyRxl jABcEu0dX5jne6GjkPL/jsa6ai4vaJEfVWdwsq7JsLsD8ZzexhenwL/amvv3lQ/i feQLkA5v4QceG2rTcXTXTRk+Oimbx+0m5Z+86+CZGlH/nk1trVAZVPmDErjaUVM/ yUnlk0L66ZwvewthZTxdBDOuQkc+xkLecswjuw3Jv0FwYt0s+/Z0IoJ7i8S//Koa qJl1BuhLUf6qXt8X/cAx0SMZFBo7vvRhAWosj3jE/ZMfcgAAvSznB8WlVvqLjC+2 cGL79jk= =cgtP -----END PGP SIGNATURE-----
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