Your message dated Thu, 23 Aug 2018 17:07:51 +0000 with message-id <e1fst5l-0002ha...@fasolo.debian.org> and subject line Bug#897781: fixed in libbpp-phyl-omics 2.4.1-1 has caused the Debian Bug report #897781, regarding libbpp-phyl-omics: ftbfs with GCC-8 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 897781: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=897781 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:libbpp-phyl-omics Version: 2.4.0-2 Severity: normal Tags: sid buster User: debian-...@lists.debian.org Usertags: ftbfs-gcc-8 Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-8/g++-8, but succeeds to build with gcc-7/g++-7. The severity of this report will be raised before the buster release. The full build log can be found at: http://aws-logs.debian.net/2018/05/01/gcc8/libbpp-phyl-omics_2.4.0-2_unstable_gcc8.log.gz The last lines of the build log are at the end of this report. To build with GCC 8, either set CC=gcc-8 CXX=g++-8 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-8/porting_to.html [...] _ZNK3bpp9RowMatrixIdEclEmm@Base 2.4.0 _ZNKSt5ctypeIcE8do_widenEc@Base 2.4.0 - _ZNKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12_M_check_lenEmPKc@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12_M_check_lenEmPKc@Base 2.4.0 _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 2.4.0 _ZNSt15_Sp_counted_ptrIDnLN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 2.4.0 _ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 2.4.0 _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS9_SaIS9_EEEEPS9_EET0_T_SI_SH_@Base 2.4.0 - _ZNSt20__uninitialized_copyILb0EE13__uninit_copyISt13move_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEES9_EET0_T_SC_SB_@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNSt20__uninitialized_copyILb0EE13__uninit_copyISt13move_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEES9_EET0_T_SC_SB_@Base 2.4.0 _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPN3bpp10BppNumberIESt4lessIS5_ESaISt4pairIKS5_S8_EEEixERSC_@Base 2.4.0 - _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPN3bpp8ClonableESt4lessIS5_ESaISt4pairIKS5_S8_EEEixERSC_@Base 2.4.0 - _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPN3bpp8ClonableESt4lessIS5_ESaISt4pairIKS5_S8_EEEixERSC_@Base 2.4.0 + _ZNSt5dequeIPN3bpp8MafBlockESaIS2_EE16_M_push_back_auxIJRKS2_EEEvDpOT_@Base 2.4.0-2 +#MISSING: 2.4.0-2# _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 2.4.0 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE15_M_range_insertIN9__gnu_cxx17__normal_iteratorIPKS5_S7_EEEEvNSA_IPS5_S7_EET_SG_St20forward_iterator_tag@Base 2.4.0 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.4.0 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.4.0-2 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE9push_backERKS5_@Base 2.4.0-2 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 2.4.0 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.4.0 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_@Base 2.4.0 _ZNSt6vectorIPKN3bpp4NodeESaIS3_EE12emplace_backIJS3_EEEvDpOT_@Base 2.4.0 - _ZNSt6vectorIPKN3bpp4NodeESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNSt6vectorIPKN3bpp4NodeESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 2.4.0 _ZNSt6vectorIPN3bpp17IterationListenerESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.0 _ZNSt6vectorIPN3bpp4NodeESaIS2_EE12emplace_backIJS2_EEEvDpOT_@Base 2.4.0 - _ZNSt6vectorIPN3bpp4NodeESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNSt6vectorIPN3bpp4NodeESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.0 _ZNSt6vectorIS_IdSaIdEESaIS1_EE17_M_default_appendEm@Base 2.4.0 _ZNSt6vectorIS_IdSaIdEESaIS1_EED1Ev@Base 2.4.0 _ZNSt6vectorIS_IdSaIdEESaIS1_EED2Ev@Base 2.4.0 _ZNSt6vectorIiSaIiEE12emplace_backIJiEEEvDpOT_@Base 2.4.0 + _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 2.4.0-2 + _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPcEEvT_S7_St20forward_iterator_tag@Base 2.4.0-2 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESM_IJEEEEESt17_Rb_tree_iteratorISB_ESt23_Rb_tree_const_iteratorISB_EDpOT_@Base 2.4.0-2 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base 2.4.0 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base 2.4.0 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 2.4.0 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE8_M_eraseEPSt13_Rb_tree_nodeISB_E@Base 2.4.0 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESM_IJEEEEESt17_Rb_tree_iteratorISB_ESt23_Rb_tree_const_iteratorISB_EDpOT_@Base 2.4.0-2 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base 2.4.0 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base 2.4.0 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 2.4.0 dh_makeshlibs: failing due to earlier errors make[1]: *** [debian/rules:15: override_dh_makeshlibs] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:10: binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2
--- End Message ---
--- Begin Message ---Source: libbpp-phyl-omics Source-Version: 2.4.1-1 We believe that the bug you reported is fixed in the latest version of libbpp-phyl-omics, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 897...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated libbpp-phyl-omics package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 23 Aug 2018 17:55:35 +0200 Source: libbpp-phyl-omics Binary: libbpp-phyl-omics-dev libbpp-phyl-omics3 Architecture: source Version: 2.4.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libbpp-phyl-omics-dev - Bio++ Phylogenetics library: genomics components (development fil libbpp-phyl-omics3 - Bio++ Phylogenetics library: genomics components Closes: 897781 Changes: libbpp-phyl-omics (2.4.1-1) unstable; urgency=medium . [ Julien Dutheil ] * New upstream version Closes: #897781 . [ Andreas Tille ] * Standards-Version: 4.2.0 * Update symbols file Checksums-Sha1: 21589064d9509cf2abfe307bfac4d6f6715051f1 2260 libbpp-phyl-omics_2.4.1-1.dsc b3132c35963eec7890514c1766b6c13f5c661a31 48482 libbpp-phyl-omics_2.4.1.orig.tar.gz 07e4abe8617695682e25991811a00fe3f72cd9d5 13488 libbpp-phyl-omics_2.4.1-1.debian.tar.xz Checksums-Sha256: a562bea383b73875f803a8523807ad207724bb334a03bc70dd85ffd7571ed39c 2260 libbpp-phyl-omics_2.4.1-1.dsc fb0908422e59c71065db874e68d5c71acddf66d8a51776f7e04a5f8d5f0f6577 48482 libbpp-phyl-omics_2.4.1.orig.tar.gz 8fc55f00e8e1a74eb03e58e864e982783a361da2f1cceac18994079899018bf1 13488 libbpp-phyl-omics_2.4.1-1.debian.tar.xz Files: 12b755c1bd0470eb2ed06c4d003190f9 2260 science optional libbpp-phyl-omics_2.4.1-1.dsc 7c1c1d06e0c0ff61ddecc7fcc4064f51 48482 science optional libbpp-phyl-omics_2.4.1.orig.tar.gz 1dcf4b6192caac8e29690219bc8ec866 13488 science optional libbpp-phyl-omics_2.4.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlt+2ecRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE/xA/+LzJ9dk2/GmwfVh/CoVJIja54otfWg5dx NBwHGWyqYADq8dKoRpGXfO2mNh1aykpg1A0q1ifX8vdh3qvhp1zX/1gExe0Eep59 ehL+rzrYb7F1GIB5OgyJm26iafXqaWpVd/gHbzT83TjP3BJp8oZXSYRnr+C08GAF qkG0vr8WTj5+bPkvfIChX42jyuFsSRnVK0ni5V0Slu+Kbympex0sKKmr1b47J/nZ QCh5Nj4Xwmv47XqMbWdIFCzKan36JcgmxNuZy4iIjBv5xhVjxnwd8oBgo1L08I0g WGeKOYZh6c7WFxyHPwOisXXUcsBmo4ebb9hvDoijBgjjsHbh2ABNDeoUqLjKf3nN X2MIMpkzRqaR4cxAWx83aCLc7JD7BfEXQadi/GkPJZIgqNVNApxV8nVCVRzzg9H1 NHK6XKEZp4GPMSZX0BuUoC53W7VUHSti1CxtBjF8hCzoCMl7AXRUQGOzLV2B0azf RKNmuXgXmIBiHJzvbPcNnloZ0O89NzeC1xYt09IH5kOJI3PVefZt/qBoR99DheKE RQt4Yka+iOY4OFSdxZ2uyY8ckrDvHaguNIJZH6Tl3DdLIpvpdxjfe3UIW2VaLpK1 KXR1ynI0CV19w/cApEZZbXm0YZzltoA3Y8Rc6fkyKhRm+lGEozVx7lDHvoV6gq0k 6fS585ZQh5I= =1aIe -----END PGP SIGNATURE-----
--- End Message ---
