Your message dated Wed, 22 Aug 2018 20:57:57 +0000
with message-id <e1fsact-0001ku...@fasolo.debian.org>
and subject line Bug#897782: fixed in libbpp-popgen 2.4.1-1
has caused the Debian Bug report #897782,
regarding libbpp-popgen: ftbfs with GCC-8
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
897782: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=897782
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:libbpp-popgen
Version: 2.4.0-2
Severity: normal
Tags: sid buster
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-8

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-8/g++-8, but succeeds to build with gcc-7/g++-7. The
severity of this report will be raised before the buster release.

The full build log can be found at:
http://aws-logs.debian.net/2018/05/01/gcc8/libbpp-popgen_2.4.0-2_unstable_gcc8.log.gz
The last lines of the build log are at the end of this report.

To build with GCC 8, either set CC=gcc-8 CXX=g++-8 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-8/porting_to.html

[...]
  
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base
 2.4.0
  
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base
 2.4.0
  
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSG_PSt13_Rb_tree_nodeIS8_E@Base
 2.4.0
+ 
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base
 2.4.0-2
  
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base
 2.4.0
  
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base
 2.4.0
  
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base
 2.4.0
@@ -982,21 +990,26 @@
  
_ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base
 2.4.0
  
_ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
 2.4.0
  
_ZNSt8_Rb_treeIiSt4pairIKidESt10_Select1stIS2_ESt4lessIiESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base
 2.4.0
+ 
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.0-2
  
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base
 2.4.0
  
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
 2.4.0
  
_ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base
 2.4.0
+ 
_ZNSt8_Rb_treeImSt4pairIKmN3bpp28MultilocusGenotypeStatistics6FstatsEESt10_Select1stIS5_ESt4lessImESaIS5_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESG_IJEEEEESt17_Rb_tree_iteratorIS5_ESt23_Rb_tree_const_iteratorIS5_EDpOT_@Base
 2.4.0-2
  
_ZNSt8_Rb_treeImSt4pairIKmN3bpp28MultilocusGenotypeStatistics6FstatsEESt10_Select1stIS5_ESt4lessImESaIS5_EE24_M_get_insert_unique_posERS1_@Base
 2.4.0
  
_ZNSt8_Rb_treeImSt4pairIKmN3bpp28MultilocusGenotypeStatistics6FstatsEESt10_Select1stIS5_ESt4lessImESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_@Base
 2.4.0
  
_ZNSt8_Rb_treeImSt4pairIKmN3bpp28MultilocusGenotypeStatistics6FstatsEESt10_Select1stIS5_ESt4lessImESaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E@Base
 2.4.0
  
_ZNSt8_Rb_treeImSt4pairIKmN3bpp28MultilocusGenotypeStatistics7VarCompEESt10_Select1stIS5_ESt4lessImESaIS5_EE24_M_get_insert_unique_posERS1_@Base
 2.4.0
  
_ZNSt8_Rb_treeImSt4pairIKmN3bpp28MultilocusGenotypeStatistics7VarCompEESt10_Select1stIS5_ESt4lessImESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_@Base
 2.4.0
  
_ZNSt8_Rb_treeImSt4pairIKmN3bpp28MultilocusGenotypeStatistics7VarCompEESt10_Select1stIS5_ESt4lessImESaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E@Base
 2.4.0
+ 
_ZNSt8_Rb_treeImSt4pairIKmNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessImESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base
 2.4.0-2
  
_ZNSt8_Rb_treeImSt4pairIKmNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessImESaIS8_EE24_M_get_insert_unique_posERS1_@Base
 2.4.0
  
_ZNSt8_Rb_treeImSt4pairIKmNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessImESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_@Base
 2.4.0
  
_ZNSt8_Rb_treeImSt4pairIKmNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessImESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base
 2.4.0
+ 
_ZNSt8_Rb_treeImSt4pairIKmdESt10_Select1stIS2_ESt4lessImESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.0-2
  
_ZNSt8_Rb_treeImSt4pairIKmdESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_@Base
 2.4.0
  
_ZNSt8_Rb_treeImSt4pairIKmdESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
 2.4.0
  
_ZNSt8_Rb_treeImSt4pairIKmdESt10_Select1stIS2_ESt4lessImESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base
 2.4.0
+ 
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base
 2.4.0-2
  
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_@Base
 2.4.0
  
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
 2.4.0
  
_ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base
 2.4.0
@@ -1008,7 +1021,10 @@
  
_ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPmSt6vectorImSaImEEEElmNS0_5__ops15_Iter_less_iterEEvT_T0_SA_T1_T2_@Base
 2.4.0
  
_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops15_Iter_less_iterEEvT_SF_T0_@Base
 2.4.0
  
_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPmSt6vectorImSaImEEEENS0_5__ops15_Iter_less_iterEEvT_S9_T0_@Base
 2.4.0
+ 
_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPmSt6vectorImSaImEEEElNS0_5__ops15_Iter_less_iterEEvT_S9_T0_T1_@Base
 2.4.0-2
+ 
_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base
 2.4.0-2
  _ZSt5fixedRSt8ios_base@Base 2.4.0
+ 
_ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPmSt6vectorImSaImEEEENS0_5__ops16_Iter_equals_valIKmEEET_SB_SB_T0_St26random_access_iterator_tag@Base
 2.4.0-2
  
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_PKS5_@Base
 2.4.0
  
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_RKS8_@Base
 2.4.0
  _ZTIN3bpp10AlleleInfoE@Base 2.4.0
dh_makeshlibs: failing due to earlier errors
make[1]: *** [debian/rules:13: override_dh_makeshlibs] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:8: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned 
exit status 2

--- End Message ---
--- Begin Message ---
Source: libbpp-popgen
Source-Version: 2.4.1-1

We believe that the bug you reported is fixed in the latest version of
libbpp-popgen, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 897...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated libbpp-popgen package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Wed, 22 Aug 2018 22:22:42 +0200
Source: libbpp-popgen
Binary: libbpp-popgen-dev libbpp-popgen8
Architecture: source
Version: 2.4.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 libbpp-popgen-dev - Bio++ Population Genetics library development files
 libbpp-popgen8 - Bio++ Population Genetics library
Closes: 897782
Changes:
 libbpp-popgen (2.4.1-1) unstable; urgency=medium
 .
   [ Julien Dutheil ]
   * New upstream version
     Closes: #897782
 .
   [ Andreas Tille ]
   * Standards-Version: 4.2.0
Checksums-Sha1:
 7be4ad991c4a110fe5d0659c77e7f71ffa0d2c06 2201 libbpp-popgen_2.4.1-1.dsc
 87cd4dfa9e51b37af0bfde87b4762464a4cc49ae 116874 libbpp-popgen_2.4.1.orig.tar.gz
 a619e61e5f89da4962dada30592b266d2a3eb20d 18580 
libbpp-popgen_2.4.1-1.debian.tar.xz
Checksums-Sha256:
 432185e21e5853e7a2e9538e04f231e50b21902b1d3a8ca4f9d843f1465e0f9e 2201 
libbpp-popgen_2.4.1-1.dsc
 03b57d71a63c8fa7f11c085e531d0d691fc1d40d4ea541070dabde0ab3baf413 116874 
libbpp-popgen_2.4.1.orig.tar.gz
 a100fcd64df35ab01bdc6ca15df76777308735f88803facc8012a028372f2a0d 18580 
libbpp-popgen_2.4.1-1.debian.tar.xz
Files:
 1b7007d3f20dc594933fc5a4110b0d02 2201 science optional 
libbpp-popgen_2.4.1-1.dsc
 cdc84495e251b6ff4260385adecbea28 116874 science optional 
libbpp-popgen_2.4.1.orig.tar.gz
 8c057bd640ba03682944d50061328651 18580 science optional 
libbpp-popgen_2.4.1-1.debian.tar.xz

-----BEGIN PGP SIGNATURE-----
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=fPL2
-----END PGP SIGNATURE-----

--- End Message ---

Reply via email to