Your message dated Wed, 22 Aug 2018 15:18:57 +0000
with message-id <e1fsuup-000gtj...@fasolo.debian.org>
and subject line Bug#897780: fixed in libbpp-core 2.4.1-1
has caused the Debian Bug report #897780,
regarding libbpp-core: ftbfs with GCC-8
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
897780: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=897780
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:libbpp-core
Version: 2.4.0-3
Severity: normal
Tags: sid buster
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-8
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-8/g++-8, but succeeds to build with gcc-7/g++-7. The
severity of this report will be raised before the buster release.
The full build log can be found at:
http://aws-logs.debian.net/2018/05/01/gcc8/libbpp-core_2.4.0-3_unstable_gcc8.log.gz
The last lines of the build log are at the end of this report.
To build with GCC 8, either set CC=gcc-8 CXX=g++-8 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-8/porting_to.html
[...]
_ZNSt8_Rb_treeIdSt4pairIKddESt10_Select1stIS2_EN3bpp28AbstractDiscreteDistribution5OrderESaIS2_EE24_M_get_insert_unique_posERS1_@Base
2.4.0
_ZNSt8_Rb_treeIdSt4pairIKddESt10_Select1stIS2_EN3bpp28AbstractDiscreteDistribution5OrderESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base
2.4.0
_ZNSt8_Rb_treeIdSt4pairIKddESt10_Select1stIS2_EN3bpp28AbstractDiscreteDistribution5OrderESaIS2_EE4findERS1_@Base
2.4.0
_ZNSt8_Rb_treeIdSt4pairIKddESt10_Select1stIS2_EN3bpp28AbstractDiscreteDistribution5OrderESaIS2_EE7_M_copyINS9_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSD_PSt18_Rb_tree_node_baseRT_@Base
2.4.0
_ZNSt8_Rb_treeIdSt4pairIKddESt10_Select1stIS2_EN3bpp28AbstractDiscreteDistribution5OrderESaIS2_EE7_M_copyINS9_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSD_PSt18_Rb_tree_node_baseRT_@Base
2.4.0
_ZNSt8_Rb_treeIdSt4pairIKddESt10_Select1stIS2_EN3bpp28AbstractDiscreteDistribution5OrderESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base
2.4.0
+
_ZNSt8_Rb_treeIiSt4pairIKiSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EEESt10_Select1stISB_ESt7greaterIiESaISB_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESM_IJEEEEESt17_Rb_tree_iteratorISB_ESt23_Rb_tree_const_iteratorISB_EDpOT_@Base
2.4.0-3
_ZNSt8_Rb_treeIiSt4pairIKiSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EEESt10_Select1stISB_ESt7greaterIiESaISB_EE24_M_get_insert_unique_posERS1_@Base
2.4.0
_ZNSt8_Rb_treeIiSt4pairIKiSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EEESt10_Select1stISB_ESt7greaterIiESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS1_@Base
2.4.0
_ZNSt8_Rb_treeIiSt4pairIKiSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EEESt10_Select1stISB_ESt7greaterIiESaISB_EE8_M_eraseEPSt13_Rb_tree_nodeISB_E@Base
2.4.0
@@ -2245,6 +2273,7 @@
_ZNSt8_Rb_treeIjSt4pairIKjS0_ISt3mapIjjSt4lessIjESaIS0_IS1_jEEES7_EESt10_Select1stIS9_ES4_SaIS9_EE7_M_copyINSD_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS9_EPKSH_PSt18_Rb_tree_node_baseRT_@Base
2.4.0
_ZNSt8_Rb_treeIjSt4pairIKjS0_ISt3mapIjjSt4lessIjESaIS0_IS1_jEEES7_EESt10_Select1stIS9_ES4_SaIS9_EE8_M_eraseEPSt13_Rb_tree_nodeIS9_E@Base
2.4.0
_ZNSt8_Rb_treeIjSt4pairIKjS0_ISt3mapIjjSt4lessIjESaIS0_IS1_jEEES7_EESt10_Select1stIS9_ES4_SaIS9_EEaSERKSD_@Base
2.4.0
+
_ZNSt8_Rb_treeIjSt4pairIKjS0_IjjEESt10_Select1stIS3_ESt4lessIjESaIS3_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESE_IJEEEEESt17_Rb_tree_iteratorIS3_ESt23_Rb_tree_const_iteratorIS3_EDpOT_@Base
2.4.0-3
_ZNSt8_Rb_treeIjSt4pairIKjS0_IjjEESt10_Select1stIS3_ESt4lessIjESaIS3_EE24_M_get_insert_unique_posERS1_@Base
2.4.0
_ZNSt8_Rb_treeIjSt4pairIKjS0_IjjEESt10_Select1stIS3_ESt4lessIjESaIS3_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS3_ERS1_@Base
2.4.0
_ZNSt8_Rb_treeIjSt4pairIKjS0_IjjEESt10_Select1stIS3_ESt4lessIjESaIS3_EE7_M_copyINS9_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS3_EPKSD_PSt18_Rb_tree_node_baseRT_@Base
2.4.0
@@ -2258,6 +2287,7 @@
_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE7_M_copyINS8_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base
2.4.0
_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base
2.4.0
_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE16_M_insert_uniqueIRKjEESt4pairISt17_Rb_tree_iteratorIjEbEOT_@Base
2.4.0
+ _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE5eraseERKj@Base 2.4.0-3
_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE8_M_eraseEPSt13_Rb_tree_nodeIjE@Base
2.4.0
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSD_PSt13_Rb_tree_nodeIS5_E@Base
2.4.0
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE24_M_get_insert_unique_posERS1_@Base
2.4.0
@@ -2267,6 +2297,7 @@
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E@Base
2.4.0
_ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EEaSERKSB_@Base
2.4.0
_ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSG_PSt13_Rb_tree_nodeIS8_E@Base
2.4.0
+
_ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base
2.4.0-3
_ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE24_M_get_insert_unique_posERS1_@Base
2.4.0
_ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_@Base
2.4.0
_ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE7_M_copyINSE_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS8_EPKSI_PSt18_Rb_tree_node_baseRT_@Base
2.4.0
@@ -2288,7 +2319,10 @@
_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEENS0_5__ops15_Iter_comp_iterIPFbiiEEEEvT_SC_T0_@Base
2.4.0
_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPmSt6vectorImSaImEEEENS0_5__ops15_Iter_less_iterEEvT_S9_T0_@Base
2.4.0
_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPdSt6vectorIdSaIdEEEElNS0_5__ops15_Iter_comp_iterISt7greaterIdEEEEvT_SC_T0_T1_@Base
2.4.0
+
_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPdSt6vectorIdSaIdEEEElNS0_5__ops15_Iter_less_iterEEvT_S9_T0_T1_@Base
2.4.0-3
_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEElNS0_5__ops15_Iter_comp_iterIPFbiiEEEEvT_SC_T0_T1_@Base
2.4.0
+
_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPmSt6vectorImSaImEEEElNS0_5__ops15_Iter_less_iterEEvT_S9_T0_T1_@Base
2.4.0-3
+
_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base
2.4.0-3
_ZSt5fixedRSt8ios_base@Base 2.4.0
_ZSt8__searchIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESA_NS0_5__ops19_Iter_equal_to_iterEET_SD_SD_T0_SE_T1_@Base
2.4.0
_ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPKcNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEENS0_5__ops17_Iter_equals_iterISA_EEET_SE_SE_T0_St26random_access_iterator_tag@Base
2.4.0
dh_makeshlibs: failing due to earlier errors
make[1]: *** [debian/rules:15: override_dh_makeshlibs] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:10: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned
exit status 2
--- End Message ---
--- Begin Message ---
Source: libbpp-core
Source-Version: 2.4.1-1
We believe that the bug you reported is fixed in the latest version of
libbpp-core, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 897...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Julien Dutheil <julien.duth...@univ-montp2.fr> (supplier of updated libbpp-core
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 18 Aug 2018 13:32:11 +0200
Source: libbpp-core
Binary: libbpp-core-dev libbpp-core4
Architecture: source
Version: 2.4.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Julien Dutheil <julien.duth...@univ-montp2.fr>
Description:
libbpp-core-dev - Bio++ Core library development files
libbpp-core4 - Bio++ Core library
Closes: 897780
Changes:
libbpp-core (2.4.1-1) unstable; urgency=medium
.
[ Julien Dutheil ]
* Compatibility with gcc 8.0
Closes: #897780
.
[ Andreas Tille ]
* Standards-Version: 4.2.0
Checksums-Sha1:
cf7355f363a3663d8d04f60bd37ae6ac34bc07d1 2110 libbpp-core_2.4.1-1.dsc
e20db3774a98d09bd325e7aaa2b38cbb0b7ad837 361311 libbpp-core_2.4.1.orig.tar.gz
9c5fe8ed1e6944c84979464bef4ce15a59e1f9a7 32460
libbpp-core_2.4.1-1.debian.tar.xz
Checksums-Sha256:
d334263c528f59c322b2d4b53525cce0e3185173353be2fa479e0781b0a26489 2110
libbpp-core_2.4.1-1.dsc
1150b8ced22cff23dd4770d7c23fad11239070b44007740e77407f0d746c0af6 361311
libbpp-core_2.4.1.orig.tar.gz
45dafd99bad94969e23e64ff46b274de2dc378eeaf769172e0621c0eed798821 32460
libbpp-core_2.4.1-1.debian.tar.xz
Files:
197b515be82cc721e6c1a3ea00e40002 2110 science optional libbpp-core_2.4.1-1.dsc
25040b547ca63e57cb79de5815ef2584 361311 science optional
libbpp-core_2.4.1.orig.tar.gz
f9489d6599f12a9916cc2bd46ff09e8e 32460 science optional
libbpp-core_2.4.1-1.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=3GOc
-----END PGP SIGNATURE-----
--- End Message ---