Your message dated Sun, 05 Aug 2018 16:04:58 +0000 with message-id <e1fmlwc-0005tw...@fasolo.debian.org> and subject line Bug#897797: fixed in libsmithwaterman 0.0+git20160702.2610e25-5 has caused the Debian Bug report #897797, regarding libsmithwaterman: ftbfs with GCC-8 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 897797: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=897797 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:libsmithwaterman Version: 0.0+git20160702.2610e25-3 Severity: normal Tags: sid buster User: debian-...@lists.debian.org Usertags: ftbfs-gcc-8 Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-8/g++-8, but succeeds to build with gcc-7/g++-7. The severity of this report will be raised before the buster release. The full build log can be found at: http://aws-logs.debian.net/2018/05/01/gcc8/libsmithwaterman_0.0+git20160702.2610e25-3_unstable_gcc8.log.gz The last lines of the build log are at the end of this report. To build with GCC 8, either set CC=gcc-8 CXX=g++-8 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-8/porting_to.html [...] dh_installdocs -a -O--no-parallel dh_installchangelogs -a -O--no-parallel dh_installman -a -O--no-parallel dh_perl -a -O--no-parallel dh_link -a -O--no-parallel dh_strip_nondeterminism -a -O--no-parallel dh_compress -a -O--no-parallel dh_fixperms -a -O--no-parallel dh_missing -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libsmithwaterman0/DEBIAN/symbols doesn't match completely debian/libsmithwaterman0.symbols --- debian/libsmithwaterman0.symbols (libsmithwaterman0_0.0+git20160702.2610e25-3_amd64) +++ dpkg-gensymbolsZYza9J 2018-05-02 13:29:00.735154786 +0000 @@ -50,7 +50,7 @@ (arch=!mips !mipsel)_ZNKSt5ctypeIcE8do_widenEc@Base 0.0+git20160702.2610e25 _ZNSt6vectorI11IndelAlleleSaIS0_EE12emplace_backIJS0_EEEvDpOT_@Base 0.0+git20160702.2610e25 _ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.2610e25 - _ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.2610e25 +#MISSING: 0.0+git20160702.2610e25-3# _ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.2610e25 _ZNSt6vectorI11IndelAlleleSaIS0_EED1Ev@Base 0.0+git20160702.2610e25 _ZNSt6vectorI11IndelAlleleSaIS0_EED2Ev@Base 0.0+git20160702.2610e25 _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EE12emplace_backIJSD_EEEvDpOT_@Base 0.0+git20160702.2610e25 @@ -59,16 +59,19 @@ _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EED2Ev@Base 0.0+git20160702.2610e25 _ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EE12emplace_backIJS7_EEEvDpOT_@Base 0.0+git20160702.2610e25 _ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EE17_M_realloc_insertIJRKS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_@Base 0.0+git20160702.2610e25 - 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--- Begin Message ---Source: libsmithwaterman Source-Version: 0.0+git20160702.2610e25-5 We believe that the bug you reported is fixed in the latest version of libsmithwaterman, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 897...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated libsmithwaterman package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 05 Aug 2018 17:35:49 +0200 Source: libsmithwaterman Binary: libsmithwaterman0 libsmithwaterman-dev smithwaterman Architecture: source Version: 0.0+git20160702.2610e25-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libsmithwaterman-dev - determine similar regions between two strings or genomic sequence libsmithwaterman0 - determine similar regions between two strings or genomic sequence smithwaterman - determine similar regions between two strings or genomic sequence Closes: 897797 Changes: libsmithwaterman (0.0+git20160702.2610e25-5) unstable; urgency=medium . * Mark some symbols as optional to build with gcc-8 Closes: #897797 * Make sure the lib is build before the binary (thanks to Andrey Rahmatullin and Dan Kegel) * Standards-Version: 4.2.0 * Lintian override for strange false positive symbols-file-contains-current-version-with-debian-revision Checksums-Sha1: c922f16a3210bef6695398b2401f58f0ffef8c13 2305 libsmithwaterman_0.0+git20160702.2610e25-5.dsc 83485295565d3849ec52e412d929e2478932cb78 6352 libsmithwaterman_0.0+git20160702.2610e25-5.debian.tar.xz Checksums-Sha256: d76d82299eceed174561c47f7db6200cbe6d8a260bbda6e748a523d84e400b0e 2305 libsmithwaterman_0.0+git20160702.2610e25-5.dsc 03159e4a5887c8d41f5b392eaa09950c47b7b036e37851ffe219088e6a89df73 6352 libsmithwaterman_0.0+git20160702.2610e25-5.debian.tar.xz Files: 7327d91b0f9cf35143e1a496255366b2 2305 science optional libsmithwaterman_0.0+git20160702.2610e25-5.dsc 2e534a71372f8fbeb15d2044547c10cd 6352 science optional libsmithwaterman_0.0+git20160702.2610e25-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAltnGhERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGshQ//cGItOrJTIiVXddnnDvLLHjF/iPTdRIXq AAcb4+XBhDS94gd8iC++X1nX8hk8dvj05uFwpD0T1x0PhTr25pC/IHGHPe0ZLhYa t2gGBrpxtOH5jpB9uj558Du83E6gxZ0sq/3MpseKQ/fEfdUtL6nDkIbR8aW/P5y3 h+XAwygKEWkG9gnl/MH4Ytbsy+ItjCg/j0vsBUAToaPOHLg7VSnN6xftGosJ/Dr9 xc8svINuYBPQ/b4arOar3eEBxH6L/tj0FuTWmUOlXiFJSZVCGQGEf1MMv1Cip0vA sCht3Lc8b0msT61z2JB5RNFCY6fLnSmfV3fsgpUPLWqkB3sg3snRn7NIBtlrmA0k CoFzJijv9l1MeeoCdCxvlhjw8t0KifJs6Z4eiBgT2SBUUSvW9n+gkYmUHt0olzxV dZ8PYNeTnQ+erbGylVZUofjgxH2i2uhOV832yyTgwCm/IpYmq5VrrLmBslx5Pvcg kbISbAaBqIV6msX2Mf2CEv49IgH1+GyvnrnJd9Mdoesa1ZWjAzQ6I+GeAfbnCaTJ ve+nh7mf5zJ6sB/+t8haddZzIFLEfM+F4DOKwRc2SmZ5urawWhBq7OFGLD+xPd5q JWHDnmI/zz2WmizOHnr7Xf+RWJT32eaVULfy5PgHDKLoBlHPpeChuSbeao2kxBCJ AIqLuWF79c4= =in4X -----END PGP SIGNATURE-----
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