Package: src:spoa
Version: 1.1.3-1
Severity: serious
Tags: ftbfs
Hello Andreas.
I tried to build this package in sid but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON
-Dspoa_build_tests=ON
cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None
-DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
-DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
"-GUnix Makefiles" -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON
-Dspoa_build_tests=ON ..
-- The CXX compiler identification is GNU 8.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
[... snipped ...]
-
_ZN4spoa19SimdAlignmentEngine10initializeINS_14InstructionSetIsEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS7_EEjjj@Base
1.1.3
+#MISSING: 1.1.3-1#
_ZN4spoa19SimdAlignmentEngine10initializeINS_14InstructionSetIiEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS7_EEjjj@Base
1.1.3
+#MISSING: 1.1.3-1#
_ZN4spoa19SimdAlignmentEngine10initializeINS_14InstructionSetIsEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS7_EEjjj@Base
1.1.3
_ZN4spoa19SimdAlignmentEngine25align_sequence_with_graphEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base
1.1.3
-
_ZN4spoa19SimdAlignmentEngine5alignINS_14InstructionSetIiEEEESt6vectorISt4pairIiiESaIS6_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISC_EE@Base
1.1.3
-
_ZN4spoa19SimdAlignmentEngine5alignINS_14InstructionSetIsEEEESt6vectorISt4pairIiiESaIS6_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISC_EE@Base
1.1.3
+#MISSING: 1.1.3-1#
_ZN4spoa19SimdAlignmentEngine5alignINS_14InstructionSetIiEEEESt6vectorISt4pairIiiESaIS6_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISC_EE@Base
1.1.3
+#MISSING: 1.1.3-1#
_ZN4spoa19SimdAlignmentEngine5alignINS_14InstructionSetIsEEEESt6vectorISt4pairIiiESaIS6_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISC_EE@Base
1.1.3
_ZN4spoa19SimdAlignmentEngine7reallocEjjj@Base 1.1.3
_ZN4spoa19SimdAlignmentEngine8preallocEjj@Base 1.1.3
_ZN4spoa19SimdAlignmentEngineC1ENS_13AlignmentTypeEaaa@Base 1.1.3
@@ -66,8 +66,9 @@
_ZNK4spoa5Graph23is_topologically_sortedEv@Base 1.1.3
_ZNK4spoa5Graph38initialize_multiple_sequence_alignmentERSt6vectorIjSaIjEE@Base
1.1.3
_ZNK4spoa5Graph8subgraphEjjRSt6vectorIiSaIiEE@Base 1.1.3
-
_ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEE@Base
1.1.3
-
_ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE9_M_rehashEmRKm@Base
1.1.3
+#MISSING: 1.1.3-1#
_ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEE@Base
1.1.3
+
_ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEEm@Base
1.1.3-1
+#MISSING: 1.1.3-1#
_ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE9_M_rehashEmRKm@Base
1.1.3
_ZNSt11_Deque_baseIjSaIjEE17_M_initialize_mapEm@Base 1.1.3
_ZNSt11_Deque_baseIjSaIjEED1Ev@Base 1.1.3
_ZNSt11_Deque_baseIjSaIjEED2Ev@Base 1.1.3
@@ -86,16 +87,17 @@
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base
1.1.3
_ZNSt6vectorISt10shared_ptrIN4spoa4EdgeEESaIS3_EE17_M_realloc_insertIJRS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base
1.1.3
_ZNSt6vectorISt10unique_ptrIN4spoa4NodeESt14default_deleteIS2_EESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base
1.1.3
- _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRKjiEEEvDpOT_@Base 1.1.3
- _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJiRiEEEvDpOT_@Base 1.1.3
- _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 1.1.3
+#MISSING: 1.1.3-1#
_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRKjiEEEvDpOT_@Base 1.1.3
+#MISSING: 1.1.3-1#
_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJiRiEEEvDpOT_@Base 1.1.3
+#MISSING: 1.1.3-1#
_ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 1.1.3
+
_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJjjEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base
1.1.3-1
_ZNSt6vectorIbSaIbEE14_M_fill_insertESt13_Bit_iteratormb@Base 1.1.3
_ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi@Base
1.1.3
_ZNSt6vectorIjSaIjEE12emplace_backIJRKiEEEvDpOT_@Base 1.1.3
_ZNSt6vectorIjSaIjEE12emplace_backIJRiEEEvDpOT_@Base 1.1.3
_ZNSt6vectorIjSaIjEE12emplace_backIJRjEEEvDpOT_@Base 1.1.3
- _ZNSt6vectorIjSaIjEE12emplace_backIJiEEEvDpOT_@Base 1.1.3
- _ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_@Base 1.1.3
+#MISSING: 1.1.3-1# _ZNSt6vectorIjSaIjEE12emplace_backIJiEEEvDpOT_@Base 1.1.3
+#MISSING: 1.1.3-1# _ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_@Base 1.1.3
_ZNSt6vectorIjSaIjEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPjS1_EEmRKj@Base
1.1.3
_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base
1.1.3
_ZTIN4spoa15AlignmentEngineE@Base 1.1.3
dh_makeshlibs: failing due to earlier errors
make: *** [debian/rules:12: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned
exit status 2
--------------------------------------------------------------------------------
The build was made with "dpkg-buildpackage -B" in my autobuilder,
but it also fails here:
https://buildd.debian.org/status/package.php?p=spoa
Thanks.
