Your message dated Mon, 09 Jul 2018 13:06:09 +0000 with message-id <e1fcvrl-000dpj...@fasolo.debian.org> and subject line Bug#894213: fixed in snakemake 5.1.5-1 has caused the Debian Bug report #894213, regarding snakemake FTBFS with dh-python >= 3.20180313 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 894213: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=894213 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: snakemake Version: 4.3.1-1 Severity: serious https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/snakemake.html ... dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:267: chmod +x /build/1st/snakemake-4.3.1/bin/snakemake; cp -r /build/1st/snakemake-4.3.1/bin /build/1st/snakemake-4.3.1/tests /build/1st/snakemake-4.3.1/.pybuild/cpython3_3.6_snakemake/build I: pybuild base:217: cd /build/1st/snakemake-4.3.1/.pybuild/cpython3_3.6_snakemake/build; python3.6 -m nose tests ..Building DAG of jobs... Provided cores: 1 Rules claiming more threads will be scaled down. Job counts: count jobs 1 1 1 rule 1: output: result.txt jobid: 0 Finished job 0. 1 of 1 steps (100%) done .E ====================================================================== ERROR: Failure: Exception (snakemake not in PATH. For testing, install snakemake with 'pip install -e .'. You should do this in a separate environment (via conda or virtualenv).) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/usr/lib/python3/dist-packages/nose/loader.py", line 417, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/usr/lib/python3.6/imp.py", line 235, in load_module return load_source(name, filename, file) File "/usr/lib/python3.6/imp.py", line 172, in load_source module = _load(spec) File "<frozen importlib._bootstrap>", line 684, in _load File "<frozen importlib._bootstrap>", line 665, in _load_unlocked File "<frozen importlib._bootstrap_external>", line 678, in exec_module File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed File "/build/1st/snakemake-4.3.1/.pybuild/cpython3_3.6_snakemake/build/tests/tests.py", line 21, in <module> raise Exception("snakemake not in PATH. For testing, install snakemake with " Exception: snakemake not in PATH. For testing, install snakemake with 'pip install -e .'. You should do this in a separate environment (via conda or virtualenv). ---------------------------------------------------------------------- Ran 4 tests in 0.457s FAILED (errors=1) E: pybuild pybuild:336: test: plugin distutils failed with: exit code=1: cd /build/1st/snakemake-4.3.1/.pybuild/cpython3_3.6_snakemake/build; python3.6 -m nose tests dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.6 returned exit code 13 make: *** [debian/rules:18: build] Error 25
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--- Begin Message ---Source: snakemake Source-Version: 5.1.5-1 We believe that the bug you reported is fixed in the latest version of snakemake, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 894...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated snakemake package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 09 Jul 2018 14:18:13 +0200 Source: snakemake Binary: snakemake Architecture: source Version: 5.1.5-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: snakemake - pythonic workflow management system Closes: 894213 Changes: snakemake (5.1.5-1) unstable; urgency=medium . * Team upload. * New upstream version Closes: #894213 * Standards-Version: 4.1.5 * debhelper 11 * d/rules: delete get-orig-source target * Build-Depends: r-cran-rmarkdown and disable patch that skips test using RMarkdown * Recommends: r-cran-rmarkdown * (Build-)Depends: python3-datrie, python3-networkx, python3-recommonmark, python3-pygraphviz, python3-pytest * Point Vcs-fields to Salsa * Drop X-Python-Version * Merge upstream commit to skip tests needing network access (upstream issue #902) * Lintian override for test data (false positive for source-is-missing) * Remove ancient-python-version-field X-Python3-Version Checksums-Sha1: 9eb74188083b0c3841ddb90eda3ddc079de165d8 2351 snakemake_5.1.5-1.dsc eff67bef798d49a68fa809e29dbedee253f1f645 10832175 snakemake_5.1.5.orig.tar.gz 15cacb5a5a9f1623a1d2f1ba607ddcef5002b66b 267452 snakemake_5.1.5-1.debian.tar.xz Checksums-Sha256: 3d1582e41d02bb7747f7565be204af995201e988680eee1897cc21a8f88c75b6 2351 snakemake_5.1.5-1.dsc baa2a826d52fbccfd4f31d011c6801c5c50f324ea5091b62c3d0d3ad372eb011 10832175 snakemake_5.1.5.orig.tar.gz 2fc35fbbd485b88a2e9140a787c5561ebac2d04b139e33d4d546da1828951067 267452 snakemake_5.1.5-1.debian.tar.xz Files: 1f36fc501ccf264e7410d8ecf116d5a5 2351 science optional snakemake_5.1.5-1.dsc 1e65dac9c04e0d4f6de3436c593b558d 10832175 science optional snakemake_5.1.5.orig.tar.gz 6ebf6e24d9d965f313e7465a84a418ce 267452 science optional snakemake_5.1.5-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAltDV8ERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHtrw//cn3w/o1LL7MWfocd6Zf6n0VxGdsPnz2H Wn6L/WDjjMrreU7hLtgOyC9OosU7gOZKn/vOfLaFF/knX59mFr057hznyOhZ7lnS 8LOaclMcjGGsAVLvh6wHmss4FbkuuXNQfdfsK7CCjINKU+A+sGzUiIQXQpNq9Jfc 9ah2GiTAEhkGkwDWupjCWyGNttiSc5aJhV5CpZydTR5VhFGL6DwyhqznZ6ux6h3E B4P9YlCkv09X/LsZ75peTSVUU6LKc/n0pOjQHRcksKEr1i3JQ0K/GeNYCDSB87qa nPqyQH2vmEsgXaIqKmSijjZTcJJuWw2SlCcFOU2BlP1bVx+X+Kv9PmSUKBF8ZJaV DD9qH7DMDDPpBi25qtLi9HjznkEpCHfnAVRzi8bIjEJMk5GWUi3UZcQyU1heWkrh OCJss11FhyJcExf/NaEDHBFP/L3lfN1sXPm7NisZlfiZf10MM9/n3A5i5g2PcDG+ P98+FJBTsfjuIPAXdNaNNRsRPi3QyTJ0vgtxgBeVpq5Da813BjWBbHRGtiNJnJuK ITsbEU9WWmecB14ZEfSVFYlGamN+dIVqLUP7z19ZNtzXC0UIjhzx9SNkomRLShcD /ABan2RIOmgJPuj0seUmQkhXzUMW1n7Xqql5aCKk16tWgqjXOSmCnLIIHFAyC2jZ V3M+Rufhl3A= =6Grc -----END PGP SIGNATURE-----
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