Your message dated Tue, 26 Jun 2018 06:49:03 +0000
with message-id <e1fxhmh-000aj3...@fasolo.debian.org>
and subject line Bug#900485: fixed in python-pbcore
1.5.0+git20180606.43fcd9d+dfsg-1
has caused the Debian Bug report #900485,
regarding python-pbcore: FTBFS and Debci failure with NumPy 1.14
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
900485: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=900485
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-pbcore
Version: 1.2.11+dfsg-1
Severity: serious
User: debian...@lists.debian.org
Usertags: needs-update
Hi Maintainer
Since the recent upload of python-numpy on 2018-05-05, python-pbcore has
been failing its autopkgtests [1] and has now also started to FTBFS in
unstable [2] with several errors similar to the following:
FAIL: test_referenceInfo (test_pbdataset.TestDataSet)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/build/1st/python-pbcore-1.2.11+dfsg/tests/test_pbdataset.py",
line 1407, in test_referenceInfo
"(27, 27, 'E.faecalis.1', 'E.faecalis.1', 1482, "
AssertionError: "(27, 27, 'E.faecalis.1', 'E.faecalis.1', 1482,
'a1a59c267ac1341e5a12bce7a7d37bcb', 0, 0)" != "(27, 27, 'E.faecalis.1',
'E.faecalis.1', 1482, 'a1a59c267ac1341e5a12bce7a7d37bcb', 0L, 0L)"
-------------------- >> begin captured logging << --------------------
pbcore.io.dataset.DataSetIO: DEBUG: Opening ReadSet resources
pbcore.io.dataset.DataSetIO: DEBUG: Done opening resources
pbcore.io.dataset.DataSetIO: DEBUG: Updating counts
pbcore.io.dataset.DataSetIO: DEBUG: Populating index
pbcore.io.dataset.DataSetIO: DEBUG: Processing resource indices
pbcore.io.dataset.DataSetIO: DEBUG: Filtering reference entries
pbcore.io.dataset.DataSetIO: DEBUG: Done populating index
Regards
Graham
[1] https://ci.debian.net/packages/p/python-pbcore/unstable/amd64/
[2]
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/python-pbcore.html
--- End Message ---
--- Begin Message ---
Source: python-pbcore
Source-Version: 1.5.0+git20180606.43fcd9d+dfsg-1
We believe that the bug you reported is fixed in the latest version of
python-pbcore, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 900...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated python-pbcore package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 26 Jun 2018 08:13:42 +0200
Source: python-pbcore
Binary: python-pbcore python-pbcore-doc
Architecture: source
Version: 1.5.0+git20180606.43fcd9d+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
python-pbcore - Python library for processing PacBio data files
python-pbcore-doc - Python library for processing PacBio data files
(documentation)
Closes: 900485
Changes:
python-pbcore (1.5.0+git20180606.43fcd9d+dfsg-1) unstable; urgency=medium
.
* Team upload
.
[ Afif Elghraoui ]
* New upstream version (git f3bcf3a)
* Updated patches
* Added tests dependency on python-coverage
* d/control: use build profile declarations
.
[ Andreas Tille ]
* New upstream version
Closes: #900485
* Relax test constraint which is rather a rounding issue
* d/watch: mode=git
* cme fix dpkg-control
- Point Vcs-fields to Salsa
- Standards-Version: 4.1.4
- Sequence of fields
- Formatting
* debhelper 11
* remove outdated X-Python-Version
* d/rules: Drop get-orig-source target
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Files:
d169817377c635c6ef48ed30c1d6cb3d 2505 python optional
python-pbcore_1.5.0+git20180606.43fcd9d+dfsg-1.dsc
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python-pbcore_1.5.0+git20180606.43fcd9d+dfsg-1.debian.tar.xz
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