Your message dated Tue, 27 Mar 2018 09:04:49 +0000 with message-id <e1f0kxb-00091u...@fasolo.debian.org> and subject line Bug#894156: fixed in bedops 2.4.32+dfsg-2 has caused the Debian Bug report #894156, regarding bedops FTBFS on mips/mipsel: Memory exhausted to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 894156: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=894156 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: bedops Version: 2.4.32+dfsg-1 Severity: serious Tags: patch https://buildd.debian.org/status/package.php?p=bedops&suite=sid ... mkdir -p ../bin && g++ -o ../bin/bedmap-typical -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bedops-2.4.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers -Wl,-z,relro -Wl,-z,now -ljansson -lz -lbz2 Bedmap.cpp /tmp/ccY7Hd7w.s: Assembler messages: /tmp/ccY7Hd7w.s: Fatal error: can't close /tmp/cc9LiHfl.o: Memory exhausted make[4]: *** [Makefile:51: ../bin/bedmap-typical] Error 1 Fix: --- debian/rules.old 2018-03-26 14:39:37.624272779 +0000 +++ debian/rules 2018-03-26 15:22:42.490793752 +0000 @@ -10,6 +10,15 @@ include /usr/share/dpkg/default.mk +include /usr/share/dpkg/architecture.mk + +# less debug info to avoid running +# out of address space +ifneq (,$(filter $(DEB_HOST_ARCH), mips mipsel)) + export DEB_CFLAGS_MAINT_APPEND = -g1 + export DEB_CXXFLAGS_MAINT_APPEND = -g1 +endif + docpkg := $(DEB_SOURCE)-doc %:
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--- Begin Message ---Source: bedops Source-Version: 2.4.32+dfsg-2 We believe that the bug you reported is fixed in the latest version of bedops, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 894...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated bedops package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 27 Mar 2018 10:10:36 +0200 Source: bedops Binary: bedops bedops-doc Architecture: source Version: 2.4.32+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: bedops - high-performance genomic feature operations bedops-doc - high-performance genomic feature operations (documentation) Closes: 894143 894156 Changes: bedops (2.4.32+dfsg-2) unstable; urgency=medium . * Team upload. . [ Adrian Bunk ] * less debug info to avoid running out of address space Closes: #894156 . [ Andreas Tille ] * bedops-doc: Breaks: bedops (<= 2.4.32) (due to separated documentation) Closes: #894143 Checksums-Sha1: d75526b7238a1bb71dba3c5f56387ac3aead835c 2129 bedops_2.4.32+dfsg-2.dsc 67653d73713a30e8e71dd0100bacce5ba632bdf9 6916 bedops_2.4.32+dfsg-2.debian.tar.xz Checksums-Sha256: bc1c09516500c3307097b04b1d18381403e25b70c6322519db52742775cc88e7 2129 bedops_2.4.32+dfsg-2.dsc d6ee7cb2e7c5c728b8b821847a7536c458e4a465aa2e33efb7f2200eeaa8ec10 6916 bedops_2.4.32+dfsg-2.debian.tar.xz Files: dc8c5c0055b7b950a891fe384be75be4 2129 science optional bedops_2.4.32+dfsg-2.dsc 984aab5a3937e215e995be252fbc00d9 6916 science optional bedops_2.4.32+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlq6A7ERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGfyRAAh5yD9YnJbD4wvj42P9VQDDmg+mfvumPH 8nbYT2HS1iUP0Ch1uAQbAqtZAQLeBOD6jRFR4rpOa3atf6nqLckAGry3wuWH085d FL62+f20Ck1n93PQ97xTZlKeArGmnahUBwB+enTNB/yRFOsUQPltAp4KnxeUqvJ6 ptJGCT4qsRh5eAPt63PX2L0jbyWirKt+CwgWyZc61SpA+KwRVkahJied860UlR0H 7EKQZHrmQ4QseA7fLak3Db/DvCt4St3YOsvN7Ie1VSeGGIISyWm9bhlSKbZrwB5u Nf7A3dvkbbXcRUJZkSmIVsjemfRJAtACKRPBM8zQiaK12RzlwK9KHaGaE6SDw9JQ xMnyFA+j1mOhVy8aDMzWqZuZpGlVWMekg6gpWsaigcvxTAXZ3ETyuYAHubp8nJFC tfIWzp93HCo2u7i2YWWNFjWsNrbuW2tPe8iDCI+WtJhtoQujcnrB0xCp8i2x+lQ+ KJaqPJYV68xyyXKAjGThT62X/aKrdgXv/6WazwM6z7RJvAH9n+MyjCAJJLcrhgeN neERj9rigukTTQXl209aCaee34cLOygzpJQipq8K385LzdwxtA3rLGxP9mHmnX/y TrSqbmC9T9QlKfoH0NOglAO1M45OBaxwOmdLQ7mefMwoJmpWTYTx7MSsHCRHKbIQ 3x7mYoRvy2k= =zQ2u -----END PGP SIGNATURE-----
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