Your message dated Thu, 15 Mar 2018 09:49:59 +0000
with message-id <e1ewpwj-000aui...@fasolo.debian.org>
and subject line Bug#890137: fixed in jellyfish 2.2.8-2
has caused the Debian Bug report #890137,
regarding jellyfish FTBFS on arm64/ppc64el: FAIL: tests/generate_sequence
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
890137: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=890137
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: jellyfish
Version: 2.2.7-1
Severity: serious
https://buildd.debian.org/status/package.php?p=jellyfish
...
FAIL: tests/generate_sequence
=============================
Seed: 3141592653
Creating fasta file 'seq10m.fa'
Seed: 1040104553
Creating fasta file 'seq1m_0.fa'
Creating fasta file 'seq1m_1.fa'
Creating fasta file 'seq1m_2.fa'
Creating fasta file 'seq1m_3.fa'
Creating fasta file 'seq1m_4.fa'
Seed: 1473540700
Creating fastq file 'seq10m.fq'
Usage: fastq2sam [options] fastq:string+
Use --help for more information
FAIL tests/generate_sequence.sh (exit status: 1)
SKIP: tests/big
===============
Skip big test
SKIP tests/big.sh (exit status: 77)
SKIP: tests/sam
===============
Skip SAM/BAM/CRAM file format test
SKIP tests/sam.sh (exit status: 77)
SKIP: tests/swig_python
=======================
SKIP tests/swig_python.sh (exit status: 77)
SKIP: tests/swig_ruby
=====================
SKIP tests/swig_ruby.sh (exit status: 77)
============================================================================
Testsuite summary for jellyfish 2.2.7
============================================================================
# TOTAL: 14
# PASS: 9
# SKIP: 4
# XFAIL: 0
# FAIL: 1
# XPASS: 0
# ERROR: 0
============================================================================
See ./test-suite.log
Please report to gmarc...@umd.edu
============================================================================
Makefile:2280: recipe for target 'test-suite.log' failed
make[4]: *** [test-suite.log] Error 1
There are also FTBFS on other architectures, but the arm64/ppc64el
ones are RC since 2.2.6-6 built there.
--- End Message ---
--- Begin Message ---
Source: jellyfish
Source-Version: 2.2.8-2
We believe that the bug you reported is fixed in the latest version of
jellyfish, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 890...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <michael.cru...@gmail.com> (supplier of updated jellyfish
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 12 Mar 2018 05:31:00 -0700
Source: jellyfish
Binary: jellyfish libjellyfish-2.0-2 libjellyfish-2.0-dev python3-dna-jellyfish
libjellyfish-perl jellyfish-examples
Architecture: source
Version: 2.2.8-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Description:
jellyfish - count k-mers in DNA sequences
jellyfish-examples - count k-mers in DNA sequences (examples for testing)
libjellyfish-2.0-2 - count k-mers in DNA sequences (dynamic library of
jellyfish)
libjellyfish-2.0-dev - count k-mers in DNA sequences (development files of
jellyfish)
libjellyfish-perl - count k-mers in DNA sequences (Perl bindings of jellyfish)
python3-dna-jellyfish - count k-mers in DNA sequences (Python bindings of
jellyfish)
Closes: 890137
Changes:
jellyfish (2.2.8-2) unstable; urgency=medium
.
* Add the missing small_mers.sh file, courtesy upstream.
* Fix arm/powerpc build, patch courtesy upstream (Closes: #890137)
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