Your message dated Mon, 22 Jan 2018 10:50:11 +0000
with message-id <e1edzg3-0001gh...@fasolo.debian.org>
and subject line Bug#877941: fixed in igv 2.4.6+dfsg-1
has caused the Debian Bug report #877941,
regarding igv: FTBFS: SVGTest.java:111: error: cannot access Localizable
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
877941: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=877941
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: igv
Version: 2.3.90+dfsg-1
Severity: serious
Tags: sid buster
Justification: fails to build from source
Hi,
igv recently started to FTBFS in sid:
compile:
[javac] Compiling 893 source files to /build/igv-2.3.90+dfsg/tmp
[javac] warning: [options] bootstrap class path not set in conjunction with
-source 1.6
[javac]
/build/igv-2.3.90+dfsg/src/org/broad/igv/tools/sort/BAMSorter.java:33: warning:
NotImplementedException is internal proprietary API and may be removed in a
future release
[javac] import
sun.reflect.generics.reflectiveObjects.NotImplementedException;
[javac] ^
[javac]
/build/igv-2.3.90+dfsg/src/org/broad/igv/tools/sort/BAMSorter.java:33: warning:
NotImplementedException is internal proprietary API and may be removed in a
future release
[javac] import
sun.reflect.generics.reflectiveObjects.NotImplementedException;
[javac] ^
[javac]
/build/igv-2.3.90+dfsg/src/org/broad/igv/tools/sort/BAMSorter.java:33: warning:
NotImplementedException is internal proprietary API and may be removed in a
future release
[javac] import
sun.reflect.generics.reflectiveObjects.NotImplementedException;
[javac] ^
[javac]
/build/igv-2.3.90+dfsg/src/org/broad/igv/tools/sort/BAMSorter.java:102:
warning: NotImplementedException is internal proprietary API and may be removed
in a future release
[javac] throw new NotImplementedException();
[javac] ^
[javac] /build/igv-2.3.90+dfsg/src/org/broad/igv/ui/svg/SVGTest.java:111:
error: cannot access Localizable
[javac] DOMImplementation domImpl =
GenericDOMImplementation.getDOMImplementation();
[javac] ^
[javac] class file for org.apache.batik.i18n.Localizable not found
[javac] /build/igv-2.3.90+dfsg/src/org/broad/igv/ui/svg/SVGTest.java:126:
error: cannot access XMLConstants
[javac] svgGenerator.stream(out, false);
[javac] ^
[javac] class file for org.apache.batik.util.XMLConstants not found
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
[javac] 2 errors
[javac] 4 warnings
BUILD FAILED
/build/igv-2.3.90+dfsg/build.xml:181: Compile failed; see the compiler error
output for details.
Andreas
igv_2.3.90+dfsg-1.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: igv
Source-Version: 2.4.6+dfsg-1
We believe that the bug you reported is fixed in the latest version of
igv, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 877...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated igv package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 22 Jan 2018 09:52:36 +0100
Source: igv
Binary: igv
Architecture: source all
Version: 2.4.6+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
igv - Integrative Genomics Viewer
Closes: 877941
Changes:
igv (2.4.6+dfsg-1) unstable; urgency=medium
.
[ Steffen Moeller ]
* debian/upstream/metadata:
- Added references to registries
- yamllint cleanliness
.
[ Andreas Tille ]
* New upstream version
* build.xml: `include name="batik.jar"` (Thanks for the hint to Markus
Koschany <a...@debian.org>)
Closes: #877941
* Standards-Version: 4.1.3
* New Build-Depends: openjfx
* Drop libconcurrent-java from Build-Depends
* debhelper 11
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igv_2.4.6+dfsg-1_all.deb
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--- End Message ---
