Your message dated Wed, 13 Dec 2017 10:34:52 +0000
with message-id <e1ep4ni-000j13...@fasolo.debian.org>
and subject line Bug#884215: fixed in salmon 0.7.2+ds1-3
has caused the Debian Bug report #884215,
regarding salmon FTBFS with libspdlog-dev 1:0.14.0-1
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
884215: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=884215
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: salmon
Version: 0.7.2+ds1-2
Severity: serious
Tags: buster sid
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/salmon.html
...
In file included from /usr/include/eigen3/Eigen/Core:421:0,
from /usr/include/eigen3/Eigen/Dense:1,
from /build/1st/salmon-0.7.2+ds1/include/GCFragModel.hpp:6,
from /build/1st/salmon-0.7.2+ds1/include/Transcript.hpp:8,
from /build/1st/salmon-0.7.2+ds1/src/DistributionUtils.cpp:3:
/usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:90:50: warning: enum
constant in boolean context [-Wint-in-bool-context]
MaySliceVectorize = bool(MightVectorize) && bool(DstHasDirectAccess)
^~~~~~~~~~~~~~~~~~~~~~~~
/build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp: In function 'bool
salmon::utils::processQuantOptions(SalmonOpts&,
boost::program_options::variables_map&, int32_t)':
/build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:1348:69: error: no matching
function for call to 'make_shared<template<class Mutex> class
spdlog::sinks::ansicolor_sink>(std::shared_ptr<spdlog::sinks::stdout_sink<std::mutex>
>&)'
std::make_shared<spdlog::sinks::ansicolor_sink>(rawConsoleSink);
^
In file included from /usr/include/c++/7/memory:81:0,
from /usr/include/boost/config/no_tr1/memory.hpp:21,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:23,
from /usr/include/boost/shared_ptr.hpp:17,
from /usr/include/boost/filesystem/path.hpp:29,
from /usr/include/boost/filesystem.hpp:16,
from /build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:2:
/usr/include/c++/7/bits/shared_ptr.h:703:5: note: candidate: template<class
_Tp, class ... _Args> std::shared_ptr<_Tp> std::make_shared(_Args&& ...)
make_shared(_Args&&... __args)
^~~~~~~~~~~
/usr/include/c++/7/bits/shared_ptr.h:703:5: note: template argument
deduction/substitution failed:
/build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:1349:62: error: no matching
function for call to 'create(const char [10], <brace-enclosed initializer
list>)'
auto consoleLog = spdlog::create("stderrLog", {consoleSink});
^
In file included from /usr/include/spdlog/spdlog.h:189:0,
from /build/1st/salmon-0.7.2+ds1/include/SalmonOpts.hpp:7,
from /build/1st/salmon-0.7.2+ds1/include/SalmonUtils.hpp:25,
from
/build/1st/salmon-0.7.2+ds1/include/UtilityFunctions.hpp:5,
from /build/1st/salmon-0.7.2+ds1/include/SBModel.hpp:7,
from
/build/1st/salmon-0.7.2+ds1/include/AlignmentLibrary.hpp:14,
from /build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:17:
/usr/include/spdlog/details/spdlog_impl.h:179:40: note: candidate:
std::shared_ptr<spdlog::logger> spdlog::create(const string&, const sink_ptr&)
inline std::shared_ptr<spdlog::logger> spdlog::create(const std::string&
logger_name, const spdlog::sink_ptr& sink)
^~~~~~
/usr/include/spdlog/details/spdlog_impl.h:179:40: note: no known conversion
for argument 2 from '<brace-enclosed initializer list>' to 'const sink_ptr&
{aka const std::shared_ptr<spdlog::sinks::sink>&}'
/usr/include/spdlog/details/spdlog_impl.h:186:40: note: candidate:
std::shared_ptr<spdlog::logger> spdlog::create(const string&,
spdlog::sinks_init_list)
inline std::shared_ptr<spdlog::logger> spdlog::create(const std::string&
logger_name, spdlog::sinks_init_list sinks)
^~~~~~
/usr/include/spdlog/details/spdlog_impl.h:186:40: note: no known conversion
for argument 2 from '<brace-enclosed initializer list>' to
'spdlog::sinks_init_list {aka
std::initializer_list<std::shared_ptr<spdlog::sinks::sink> >}'
/usr/include/spdlog/details/spdlog_impl.h:201:40: note: candidate:
template<class It> std::shared_ptr<spdlog::logger> spdlog::create(const
string&, const It&, const It&)
inline std::shared_ptr<spdlog::logger> spdlog::create(const std::string&
logger_name, const It& sinks_begin, const It& sinks_end)
^~~~~~
/usr/include/spdlog/details/spdlog_impl.h:201:40: note: template argument
deduction/substitution failed:
/build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:1349:62: note: candidate
expects 3 arguments, 2 provided
auto consoleLog = spdlog::create("stderrLog", {consoleSink});
^
In file included from /usr/include/spdlog/spdlog.h:189:0,
from /build/1st/salmon-0.7.2+ds1/include/SalmonOpts.hpp:7,
from /build/1st/salmon-0.7.2+ds1/include/SalmonUtils.hpp:25,
from
/build/1st/salmon-0.7.2+ds1/include/UtilityFunctions.hpp:5,
from /build/1st/salmon-0.7.2+ds1/include/SBModel.hpp:7,
from
/build/1st/salmon-0.7.2+ds1/include/AlignmentLibrary.hpp:14,
from /build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:17:
/usr/include/spdlog/details/spdlog_impl.h:193:40: note: candidate:
template<class Sink, class ... Args> std::shared_ptr<spdlog::logger>
spdlog::create(const string&, Args ...)
inline std::shared_ptr<spdlog::logger> spdlog::create(const std::string&
logger_name, Args... args)
^~~~~~
/usr/include/spdlog/details/spdlog_impl.h:193:40: note: template argument
deduction/substitution failed:
/build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:1349:62: note: couldn't
deduce template parameter 'Sink'
auto consoleLog = spdlog::create("stderrLog", {consoleSink});
^
/build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:1351:69: error: no matching
function for call to 'create(const char [9], <brace-enclosed initializer list>)'
auto jointLog = spdlog::create("jointLog", {fileSink, consoleSink});
^
In file included from /usr/include/spdlog/spdlog.h:189:0,
from /build/1st/salmon-0.7.2+ds1/include/SalmonOpts.hpp:7,
from /build/1st/salmon-0.7.2+ds1/include/SalmonUtils.hpp:25,
from
/build/1st/salmon-0.7.2+ds1/include/UtilityFunctions.hpp:5,
from /build/1st/salmon-0.7.2+ds1/include/SBModel.hpp:7,
from
/build/1st/salmon-0.7.2+ds1/include/AlignmentLibrary.hpp:14,
from /build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:17:
/usr/include/spdlog/details/spdlog_impl.h:179:40: note: candidate:
std::shared_ptr<spdlog::logger> spdlog::create(const string&, const sink_ptr&)
inline std::shared_ptr<spdlog::logger> spdlog::create(const std::string&
logger_name, const spdlog::sink_ptr& sink)
^~~~~~
/usr/include/spdlog/details/spdlog_impl.h:179:40: note: no known conversion
for argument 2 from '<brace-enclosed initializer list>' to 'const sink_ptr&
{aka const std::shared_ptr<spdlog::sinks::sink>&}'
/usr/include/spdlog/details/spdlog_impl.h:186:40: note: candidate:
std::shared_ptr<spdlog::logger> spdlog::create(const string&,
spdlog::sinks_init_list)
inline std::shared_ptr<spdlog::logger> spdlog::create(const std::string&
logger_name, spdlog::sinks_init_list sinks)
^~~~~~
/usr/include/spdlog/details/spdlog_impl.h:186:40: note: no known conversion
for argument 2 from '<brace-enclosed initializer list>' to
'spdlog::sinks_init_list {aka
std::initializer_list<std::shared_ptr<spdlog::sinks::sink> >}'
/usr/include/spdlog/details/spdlog_impl.h:201:40: note: candidate:
template<class It> std::shared_ptr<spdlog::logger> spdlog::create(const
string&, const It&, const It&)
inline std::shared_ptr<spdlog::logger> spdlog::create(const std::string&
logger_name, const It& sinks_begin, const It& sinks_end)
^~~~~~
/usr/include/spdlog/details/spdlog_impl.h:201:40: note: template argument
deduction/substitution failed:
/build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:1351:69: note: candidate
expects 3 arguments, 2 provided
auto jointLog = spdlog::create("jointLog", {fileSink, consoleSink});
^
--- End Message ---
--- Begin Message ---
Source: salmon
Source-Version: 0.7.2+ds1-3
We believe that the bug you reported is fixed in the latest version of
salmon, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 884...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Gert Wollny <g...@debian.org> (supplier of updated salmon package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 13 Dec 2017 11:08:05 +0100
Source: salmon
Binary: salmon
Architecture: source
Version: 0.7.2+ds1-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Gert Wollny <g...@debian.org>
Description:
salmon - wicked-fast transcript quantification from RNA-seq data
Closes: 884215
Changes:
salmon (0.7.2+ds1-3) unstable; urgency=medium
.
* Team upload.
* d/p/libspdlog: Correct sink class initialization, Closes: #884215
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Files:
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--- End Message ---
