Your message dated Wed, 13 Dec 2017 07:03:56 +0000 with message-id <e1ep15a-0000k0...@fasolo.debian.org> and subject line Bug#884269: fixed in samtools 1.6-2 has caused the Debian Bug report #884269, regarding samtools: FTBFS: bam_sort.c:43:10: fatal error: htslib/hts_os.h: No such file or directory to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 884269: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=884269 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: samtools Version: 1.6-1 Severity: serious Justification: fails to build from source (but built successfully in the past) samtools/experimental FTBFS: https://buildd.debian.org/status/package.php?p=samtools&suite=experimental gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_sort.o bam_sort.c bam_sort.c:43:10: fatal error: htslib/hts_os.h: No such file or directory #include "htslib/hts_os.h" ^~~~~~~~~~~~~~~~~ compilation terminated. Makefile:126: recipe for target 'bam_sort.o' failed make[2]: *** [bam_sort.o] Error 1 Andreas
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--- Begin Message ---Source: samtools Source-Version: 1.6-2 We believe that the bug you reported is fixed in the latest version of samtools, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 884...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated samtools package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 13 Dec 2017 07:44:31 +0100 Source: samtools Binary: samtools samtools-test Architecture: source Version: 1.6-2 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: samtools - processing sequence alignments in SAM and BAM formats samtools-test - test files for the samtools package Closes: 884269 Changes: samtools (1.6-2) experimental; urgency=medium . * Fix versioned Build-Depends Closes: #884269 Checksums-Sha1: bc2dfca1692825a405412b05931f414838aec72b 2215 samtools_1.6-2.dsc e120fece237332c82c37ed902a1ec2f653309902 20552 samtools_1.6-2.debian.tar.xz 89b33009c9ed30c796d4b2a069072bf6a45749b6 13504 samtools_1.6-2_source.buildinfo Checksums-Sha256: dd7dd9ae514a5e4530ac9bca3ddba7740d7e1e4a50c8c07e1207e20617bae564 2215 samtools_1.6-2.dsc 672982fbeb6c64b451178c43f44eeaa8281968fe8edd3c172da8e090ae1852fd 20552 samtools_1.6-2.debian.tar.xz 2d2ccb86c89556a37de684d5b804b8ecc98c1c6f015c5621efc5c4b581a877ba 13504 samtools_1.6-2_source.buildinfo Files: 638217d2e1bcd7027c562bb5db48b45c 2215 science optional samtools_1.6-2.dsc 76ab7d2ae58e83f20ccc961a1f559c61 20552 science optional samtools_1.6-2.debian.tar.xz c6c9a6b46d9fc103dd1505600a6477cc 13504 science optional samtools_1.6-2_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlowzIgOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtHLfg//VIji/PZf1oASCwjuWPBh/1hgsyuXAtPWLYsp VMr8h1Hh38hMF5cUqjHSzhxgikSVv9RulgV2VS75g8QaCMzTq2UFa4WJSwj/kJ/H MmPyi3Tw0x3/MEwzD/X7sCD4EPVQ1CuU4JJsNWO0aFsduyGC4JhnrOy0rCCSskF1 xOhVZnMbgZeXUWlHcWPy8X5IDp2QAZtIss0cGrjvv7fBFAOhaAH8HZP19VWBOkL5 VWiKgMHjCpEyaOEngjAIF6Hk7K0+jGxO938BtQB7gwtSRYBRVelxGS+0lAxlTWFi vydYJxIRLxFCrugjmC0TtAMNW+ldctsTGTO3GJAVf2KWHdmwX0SQsNabiYNEa4cG 6RlWIh4jAIyYO99kxL3LFeMKdlpxPF+z2CvwE9XRvnbJCe883gl06M8PtsR/fwky K07guRjhLco0c3oK/KBqTS23M08leBkjKNyOoegUzJke8xrYOYuc8ck1FwW+Bofh GE5aKthIAj6yGzBD3VxPOkvPMSLcAmSeP6e6RWjIaChFXHjtAP6x7DQ0cMyufgik JtinuTKIOxrhm64nuzrsKaLIyEbrienuSMj2ujGkMDJNCmOJZuojwf4lsIqVjrmW imUUTV6XTjVwA4c1Wtnn330sFHOjleDSiQ27lzCd5yiT5vP18gGEBtYqXNvH1GPf wsQp36A= =8l5U -----END PGP SIGNATURE-----
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