Source: sra-sdk Version: 2.8.1-2+dfsg-2 Severity: serious Tags: buster sid Forwarded: https://github.com/ncbi/sra-tools/issues/67
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/sra-sdk.html ... /build/1st/sra-sdk-2.8.1-2+dfsg/tools/bam-loader/bam.c:3998:17: error: conflicting types for 'canonicalize' static unsigned canonicalize(uint32_t cigar[], unsigned n) ^~~~~~~~~~~~ In file included from /usr/include/features.h:406:0, from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/7/include/stdint.h:9, from /usr/include/ncbi-vdb/kfc/defs.h:34, from /usr/include/ncbi-vdb/klib/defs.h:31, from /build/1st/sra-sdk-2.8.1-2+dfsg/tools/bam-loader/bam.c:27: /usr/include/x86_64-linux-gnu/bits/mathcalls.h:435:1: note: previous declaration of 'canonicalize' was here __MATHDECL_1 (int, canonicalize,, (_Mdouble_ *__cx, const _Mdouble_ *__x)); ^ /build/1st/sra-sdk-2.8.1-2+dfsg/tools/bam-loader/bam.c:2990:17: warning: 'SequenceLengthFromCIGAR' defined but not used [-Wunused-function] static unsigned SequenceLengthFromCIGAR(const BAM_Alignment *self) ^~~~~~~~~~~~~~~~~~~~~~~ /build/1st/sra-sdk-2.8.1-2+dfsg/build/Makefile.rules:31: recipe for target 'bam.o' failed make[5]: *** [bam.o] Error 1
