Your message dated Fri, 10 Nov 2017 22:21:00 +0000
with message-id <e1edhfy-0008rv...@fasolo.debian.org>
and subject line Bug#881331: fixed in bcftools 1.5-4
has caused the Debian Bug report #881331,
regarding bcftools: needs a versioned dependency on libhts2
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
881331: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=881331
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: bcftools
Version: 1.5-3
Severity: serious
Control: block -1 by 879886
bcftools needs a versioned dependency on libhts2, since it uses a symbol
that apeared only after the 1.5 release:
mattia@warren ~/pbuilder/result/sid/amd64/foo/usr/bin % readelf -s
bcftools|grep hts_log
188: 0000000000000000 0 FUNC GLOBAL DEFAULT UND hts_log
I'm opening this bug, and calling for a manual action instead of a plain
binNMU, since the situation of htlib/pysam/bcftools is underoptimal, and
therefore I recommend adding a versioned build-dependency as well to
make sure to build with an htslib version shipping with a symbols file.
--
regards,
Mattia Rizzolo
GPG Key: 66AE 2B4A FCCF 3F52 DA18 4D18 4B04 3FCD B944 4540 .''`.
more about me: https://mapreri.org : :' :
Launchpad user: https://launchpad.net/~mapreri `. `'`
Debian QA page: https://qa.debian.org/developer.php?login=mattia `-
signature.asc
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--- End Message ---
--- Begin Message ---
Source: bcftools
Source-Version: 1.5-4
We believe that the bug you reported is fixed in the latest version of
bcftools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 881...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Graham Inggs <gin...@debian.org> (supplier of updated bcftools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 10 Nov 2017 12:41:15 +0000
Source: bcftools
Binary: bcftools
Architecture: source
Version: 1.5-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Graham Inggs <gin...@debian.org>
Description:
bcftools - genomic variant calling and manipulation of VCF/BCF files
Closes: 881331
Changes:
bcftools (1.5-4) unstable; urgency=medium
.
* Team upload.
* Add debian/clean to fix FTBFSx2
* Update patches as they were applied upstream
* Bump versioned Build-Depends on htslib to make sure we pick up
versioned dependency on libhts2 (Closes: #881331)
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