Your message dated Fri, 10 Nov 2017 19:04:40 +0000 with message-id <e1edeby-000bt3...@fasolo.debian.org> and subject line Bug#879886: fixed in htslib 1.5-3 has caused the Debian Bug report #879886, regarding libhts2: libhts2 needs to handle ABI changes to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 879886: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=879886 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: libhts2 Version: 1.5-1 Severity: critical Dear Maintainer, libhts2 introduced an ABI change which broke python-pysam, and a new version of python-pysam needed to be released to update to the new ABI. libhts2 probably needs a proper symbols file to make it easier to see when the ABI is changing. https://wiki.debian.org/UsingSymbolsFiles Mattia Rizzolo, also suggests other methods of dealing with managing ABI changes. Such as bumping soname, changing the package name and use Conflicts, or adding versioned Breaks against broken packages -- System Information: Debian Release: buster/sid APT prefers testing-debug APT policy: (500, 'testing-debug'), (500, 'stable-debug'), (500, 'testing'), (500, 'stable'), (110, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.13.0-1-amd64 (SMP w/4 CPU cores) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Versions of packages libhts2 depends on: ii libbz2-1.0 1.0.6-8.1 ii libc6 2.24-17 ii libcurl3-gnutls 7.55.1-1 ii liblzma5 5.2.2-1.3 ii libssl1.1 1.1.0f-5 ii zlib1g 1:1.2.8.dfsg-5 libhts2 recommends no packages. libhts2 suggests no packages. -- no debconf information
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--- Begin Message ---Source: htslib Source-Version: 1.5-3 We believe that the bug you reported is fixed in the latest version of htslib, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 879...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Diane Trout <di...@ghic.org> (supplier of updated htslib package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Fri, 10 Nov 2017 12:38:12 +0100 Source: htslib Binary: libhts2 libhts-dev htslib-test tabix Architecture: source Version: 1.5-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Diane Trout <di...@ghic.org> Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts2 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Closes: 879886 Changes: htslib (1.5-3) unstable; urgency=medium . * Team upload . [ Diane Trout ] * Restore libhts2.symbols and update for changes from 1.4.1 and 1.5 versions of htslib. (Closes: #879886) . [ Graham Inggs ] * Update 877670.patch as it was applied upstream Checksums-Sha1: ec50e947644f018edae84c9042ef46dfa78d928c 2247 htslib_1.5-3.dsc d7bbe77cff39997f0b98c86c9bf99cf77d618c61 13812 htslib_1.5-3.debian.tar.xz c93e0ae9c1f59622da1891f0f07c32c2b1f41535 6281 htslib_1.5-3_source.buildinfo Checksums-Sha256: ef499dbf3ce18efda19a15860a5be3a5bf5c8632c8ef19c3776a36090662a6af 2247 htslib_1.5-3.dsc fc34a698d8b504e82477c3aa3a321e8dbcac5aa83ab432975a7bfb9a25ea3bb6 13812 htslib_1.5-3.debian.tar.xz a87f3d081336d6adb3d4752c136582fbbff47431a0c69f4bf491fe33d9ffedd4 6281 htslib_1.5-3_source.buildinfo Files: aa924dc616f30bfbfff112f9f16fa7c6 2247 science optional htslib_1.5-3.dsc affdc77ff751a4667a243e4d08d05760 13812 science optional htslib_1.5-3.debian.tar.xz b342d91f7ad4a8fe64f65cff390af455 6281 science optional htslib_1.5-3_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEETQVcMeSBIEX5AQ11mQ04NnM013AFAloF86QACgkQmQ04NnM0 13CZ9g//eMV/d3s0kuTSwE5iw0IOcM7j0mupeSQ1BiIIYQ/Xl4lrZSJJXlpUtnDi OEYyeJOklM/cHTATqt6mk+4+dlvDmi3VDr5fmwuEYWOXe1ZV/3z5hir51Z8VdA2e QlAPSdJsxfHrd+rZ30iH+vI6vnGDE9YwiRZtyhXzRE+6omG4pBPkohfKk1FVXUC+ Rqo000xIeu18e+c/cGrK4wQc3WwDz7gyOxE5NZLEaIqjMDcNIje2O6mXW8xGAg/Q RajEaHW5Mb1kttOCIOGwUCUVfUXvPHuT7RtT+3ctxKq7UfqQ4iKmjyL/ECGNqbw0 K2BDufK6VFDOAmyJ3dTqs01Pwg5sa/SgKR+6FJRnQURMu3Vzoyjj2RooJ6RM6i6q QpnH6bH2PhpPWGCnCKfYrlU1NHZ8NlB1XZ07Y8fPRXA2HmDeWGs1pJIsJuHfF5xu rSQRWuN6RJbfFT2aaguh0IRiIu0rZVg/ChbHnQrgNxYWIG2YEaJWYcTulGOME4m2 WH8YoOwyvrT4kByr7tE70zvILHHv67OfGrwhYeghjlUUYk9wDnpZGd5/Nw86wfqo HDj/+/3RpThkQBjdznhevZz041UglmoKzPk0TZK3g4Q0/a/C+aO55MJL/aROdV1Z Ev3dnGe+DN8LMmnWb+A45zZkx6VtoSATXmhrVfOiinVzPU5x1F8= =/gbH -----END PGP SIGNATURE-----
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